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Yeast Strains for Temperature-sensitive Growth on Solid Media Dahlquist:RNA-seq Protocol Yeast Colony PCR For genotyping yeast systematic deletion strains...

for ChIP-seq and RSeqQC (>800 citations) for RNA-seq. In collaboration with experimental biologists, we have used bioinformatics to gain novel biological...

number and single cells using antibody-guided chromatin tagmentation (ACT-seq). Nature Communications, 10: 3747. Ku WL, Nakamura K, Gao W, Cui K, Hu G,...

first_fasta_DNA.seq second_fasta_DNA.seq dotter first_fasta_AA.seq second_fasta_AA.seq dotter first_fasta_DNA.seq second_fasta_AA.seq Note that the order...

adapter sequences were changed in September 2017 to be compatible with the HiSeq 4000. Illumina PCR primers: PCR1: 5'AATGATACGGCGACCACCGAGATCTACACTCTTTCCC...

proteins. Gene expression: RNA transcription, splicing, translation (Ribo-Seq); LINC RNA, small RNA, RNA editing, etc. Genetics: SNP, indel, translocation...

supports small RNA sequencing (small RNA-seq) using the Illumina platform. Small RNA Seq can be helpful in identifying novel small RNA molecules and the relative...

aid in the understanding of gene regulation. Small RNA Seq can be helpful in identifying novel small RNA molecules. Unlike more traditional small RNA characterization...

manuscript JG: looks at three attributes that affect OTU estimation PCR/seq error, multiple seq alignment (overestimates) vs. pairwise, linkage method in clustering...

presence of Escherichia coli SeqA protein. Mol Microbiol. 2004 Oct;54(1):123-31. PubMed Molina F, Skarstad K. Replication fork and SeqA focus distributions in...

the discovery of novel TF and regulatory motifs. . 2. Epigenomic regulation of maize endosperm development We are also producing ChIP-Seq data for a combination...

prevention of outbreak that could affect avifauna. We will use RNA-Seq to identify novel viral agents in wild birds. For this we will use RNA extracted from...

factors - novel mechanisms for the coordination of gene expression?" Announcement in Eracareers A position in Bioinformatics to work on RNA-seq data analysis...

       Testing Authors: Chris Brunson, Karina Padilla Purpose To create a novel biosensor that senses inorganic mercury and generates a color as an indicator...

these questions using a high-throughput sequencing technology known as Tn-Seq. I am also interested in how the presence of coinfecting microbes in the CF...

ML: Total diversity or specific novel branches/clades? TS: Probably rarefaction type analysis, but will look for novel lineages ML: Could higher sequencing...

the microscale, including working in a laminar flow regime, there are some novel problems. Two such problems are sample dispersion and mixing. There have...

house). Fortunately for us, the non-patterned flowcells (such as MiSeq, NextSeq and HiSeq2000) have a significantly lower issue with this than the newer instruments...

from ~50 libraries has been very positive, and we are starting to explore novel indexes beyond the currently-available list of 24. For de novo assembly of...

Oceans update PATRIC genomes as reference db JE: check for phylogenetically novel genomes Genome clusters Gene clusters within genome clusters DIAMOND for...