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- Wikiomics:RNA-Seq (section Spliced Mappers (tested))http://www.netlab.uky.edu/p/bioinfo/MapSplice/ current version: MapSplice 2.1.8 from 07/01/2014 active development: yes base mapper: bowtie (new version finally...12 KB (1,677 words) - 02:50, 30 September 2014
- mRNA splicing is implicated in development of cancer, and especially in the progression to metastasis. The splicing factor FOX2 is a global splicing regulator...3 KB (367 words) - 21:17, 19 June 2010
- Li ZM, Yin Y^, He X^, Zhou LQ^. (2022) Regulatory roles of alternative splicing at Ezh2 gene in mouse oocytes. Reprod Biol Endocrinol 20(1):99. doi: 10...15 KB (2,331 words) - 01:05, 25 March 2024
- "Cancer-specific alternative splicing" Guests are welcome! Location: ETH Hönggerberg Campus, Seminar Room HPK D3 Google Maps link For more information, please...11 KB (860 words) - 11:53, 16 September 2011
- depth, so even the exons may contain child annotations (e.g., locations of splice site donors and acceptors). There are many types of genome annotations including...6 KB (715 words) - 03:18, 4 March 2008
- 78026 Versailles Cedex France Tel: +33 1 30 83 33 16 Email us Twitter Google map See who visits our website: Flag counter Detailed stats The Jiménez-Gómez...6 KB (786 words) - 07:58, 17 December 2011
- Wikiomics:Grid computing Wikiomics:HMMER Wikiomics:ISBN Wikiomics:Interwiki map Wikiomics:Linux packages Wikiomics:List of articles Wikiomics:Meta:Account...719 bytes (341 words) - 04:52, 3 March 2010
- analysis of mRNA splicing. 2007. RNA, in press. Moore, M., Schwartzfarb, EM, Silver, PA and Yu, MC. Differential recruitment of the splicing machinery during...28 KB (3,691 words) - 11:12, 20 January 2013
- transform the mapper output (often SAM, but sometimes different format (MAF for LAST, MAP for GEM) to get such BAM files. BWA is a the default mapper used by...25 KB (4,166 words) - 10:56, 11 September 2014
- Differential recruitment of the splicing machinery during transcription predicts genome-wide patterns of mRNA splicing. 2006. Molecular Cell, 24:903-915...42 KB (5,705 words) - 07:06, 3 June 2015
- Kwon EJ, Park JE, Lee W, Kang S, Kim M, Kim W, and Cha HJ. Connectivity map-based drug repositioning of bortezomib to reverse the metastatic effect of...26 KB (9 words) - 10:44, 28 April 2024
- 784, 785, 786, 787, 788, 789, 790 SpliceDonor AGGTRAG none SpliceDonor2 GGTRAGT none SpliceAcc YYYNYAGGW none SpliceAcc2 YNCAGGW none RNADestab ATTTA none...14 KB (1,652 words) - 12:40, 16 June 2009
- Protein Structure Prediction Guided by Predicted Backbone Structure and Contact Map.J Comput Chem. 2019 Dec 17. doi: 10.1002/jcc.26132. Zheng S, Rao J, Zhang...4 KB (627 words) - 01:01, 14 January 2020
- all in one window MAPPed data made more portable to reach a wider audience by sporting a variety of new web-ready exports Exported maps retain their interactive...9 KB (1,360 words) - 18:07, 17 October 2010
- - Scripts for post-processing of YASRA contigs. TopHat - A fast splice junction mapper for RNA-Seq reads. Cufflinks - Assembles transcripts, estimates...8 KB (647 words) - 17:46, 5 June 2012
- sourceforge.net/ how to create a synteny map between two genomes: http://synteny.cnr.berkeley.edu/wiki/index.php/SynMap http://compgen.bscb.cornell.edu/phast/...4 KB (646 words) - 03:50, 17 March 2011
- analysis to a more systems-based approach. We used novel imaging techniques to map interactions between transport factors and the nuclear pore. We were also...11 KB (1,726 words) - 12:49, 11 April 2015
- ESI-LC/MS data" MSQuant Parser for Mascot results for quantitation (Windows only) MapQuant Suite Trans Proteomic Pipeline (TPP) most popular, included in Sorcerer...14 KB (1,304 words) - 08:14, 1 August 2008
- their of origin? Example:To give a concrete example, the C. elegans reference map consists of six chromosome-length entry points. Each chromosome is formed...10 KB (1,403 words) - 03:01, 2 February 2010
- /home/trait/core/gff_morbid_map.py /home/trait/core/gff_nonsynonymous_filter.py /home/trait/core/gff_omim_map.py /home/trait/core/gff_pharmgkb_map.py /home/trait/...13 KB (2,048 words) - 21:08, 10 December 2009
