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Some notes of databases with spatial metadata http://mg-rast.mcs.anl.gov/mg-rast-test/FIG/metagenomics.cgi http://www.terragenome.org/ http://www.megx...

database gaps Compare Shotmap vs. MG-RAST (SEED converted to KEGG) to confirm that Shotmap abundances agree with MG-RAST Will collapse KEGG OGs into pathways...

lot and perform almost as well as six-frame translation Comparison with MG-RAST Shotmap annotates more KOs Abundance estimates are correlated (on log scale)...

across databases Comparison to taxonomic profiles Differentiation from MG-RAST, humann, etc. M5NR is pretty diverse But shotmap allows a custom db (should...

Guillaume, Josh, Sarah Guillaume did not find any new datasets in CAMERA or MG-RAST Tom: Data Driven Discovery early career investigator application (slides)...

progress Jonathan: Is there a consensus on how to do metagenomic annotation? MG-RAST is commonly used, as a black box Humann for KEGG We should evaluate their...

"available" for browsing under the "marine" filter for metagenomics projects. MG-Rast GOS - 88 samples - 12,358Mbp HOT/ALOHA - 14 samples - 128Mbp Chula Vista...

Might be some available unpublished data that we can use here as well as MG-RAST. We should probably talk to Moore or Samantha and ask them how to prioritize...

Falcon 12 x 75 mm) for RAST sample. Fisher #14-959-11A (Falcon # 352063) Sterile Dulbecco’s Phosphate buffered saline (PBS), Ca++ and Mg++ free. VWR#45000-436...

pathologies. Our microarray data and our newly generated microbiome data MG-rast suggest other potential sources of oxidative stress, which are our current...

filtered data sets for 16S and metagenomic RNA studies from SILVA, megX and mg-rast (sequences and meta data). All sets area available on Edhar as flat files...