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- Wikiomics:RNA-Seq (section GMAP/GSNAP)To run: gsnap --dir=genome_directory --db=genome_database --batch=2 --localsplicedist=10000 --nthreads=4 --nofails my_reads.fasta Check "gsnap --help"...12 KB (1,677 words) - 02:50, 30 September 2014
- Wikiomics:WinterSchool day2 (section GSNAP from GMAP)still being used for ESTs mapping. #build the database for both GMAP and GSNAP gmap_build -d genomeDBid ref_gen.fa #there are 3 Makefiles created which...25 KB (4,166 words) - 10:56, 11 September 2014
- reference genome Bowtie2 BWA - Burrows-Wheeler Aligner, fast and robust GSNAP SMALT Novoalign - primarily useful for resequencing (i.e. aligning against...4 KB (0 words) - 16:41, 23 September 2017
