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- regulation mechanism CIS model Trans model lncRNA expression median normalized - DESeq Conserved lncRNA in mouse and human for further knock down Paul - H2AZ active...1 KB (205 words) - 10:46, 7 March 2012
- infection RNA-Seq data. The RNA-Seq pipeline is working as expected using BWA/DESeq/GSEA. Genome functional annotations have been investigated. A better set...4 KB (198 words) - 08:09, 9 July 2012
- would like to statistically analyze. We typically do this analysis using DESeq2 in R. The analysis below is for data aligned with kallisto First install...102 KB (14,283 words) - 14:09, 31 May 2024
- (assembly and differential expression) using tools like Trinity and edgeR/DESeq Dec 5 noon Charlie Whittaker (MIT) MIT 68-156 Jan 9, 2014 noon Jie Wu (MIT)...23 KB (222 words) - 08:59, 4 December 2020
- transcriptome analysis: Quantifying and annotating aligned reads GenomicRanges DESeq edgeR Normalizing RNA-Seq read count data and identifying differentially...19 KB (2,211 words) - 12:56, 29 May 2013
- transcriptome analysis: Quantifying and annotating aligned reads GenomicRanges DESeq edgeR Normalizing RNA-Seq read count data and identifying differentially...39 KB (4,567 words) - 08:27, 22 August 2017
- differentially expressed genes has not a good overlap with leading R packages (DESeq and EdgeR). web site: https://github.com/pezmaster31/bamtools Bamtools is...25 KB (4,166 words) - 10:56, 11 September 2014
- knocked out will accelerate. R Algorithms assign a score and p value (EdgeR, DESeq2, BAGEL, MAGeCK) to each gene in order to determine cancer fitness genes...33 KB (3,407 words) - 10:49, 18 January 2024
