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- Etchevers:Cardiac morphogenesis/2008/11/05 (section Getting C16 whole embryo files ready for CisGenome)morphogenesis Main project page Previous entry Next entry Redownloaded CisGenome and noticed that it was v1.1 so in theory included a ELAND -> ALN conversion...2 KB (0 words) - 16:23, 26 September 2017
- Etchevers:Cardiac morphogenesis/2009/02/25 (section Steps taken in CisGenome to analyze ChIP-seq data)(D:\Heather\Downloads\cisgenome_v1\cisgenome_v1\2009-02-13_GCM2_results\ et cetera. The reference sequence used by Fasteris was Homo Sapiens full genome, Version NCBI...13 KB (0 words) - 16:51, 26 September 2017
- ChIP-enriched regions using Next-generation sequencing (MACS; Genome Biology 2008) and Affymetrix whole-genome tiling arrays, including 1) Model-based Analysis of...6 KB (2 words) - 10:49, 10 July 2015
- riboregulator is composed of two interacting parts—the cis-repressive sequence and the trans-activating sequence. The cis sequence is directly upstream of the ribosome...4 KB (595 words) - 20:29, 2 July 2007
- the host genome via the action of viral integrase. Long terminal repeats flank either side the viral read that integrates into a host genome. 5' and 3'...47 KB (7,325 words) - 09:28, 18 March 2024
- Victor Lobanenkovc and Jumin Zhou. Genome wide ChIP-chip analyses reveal important roles for CTCF in Drosophila genome organization. Developmental Biology...5 KB (507 words) - 21:51, 17 February 2011
- QRNA uses comparative genome sequence analysis to detect conserved RNA secondary structures, including both ncRNA genes and cis-regulatory RNA structures...4 KB (451 words) - 14:01, 3 March 2008
- they provide knowledge about a large part of the human genome (2) the role of SINEs and LINEs in genome evolution (e.g., via recombination) and (3) it is likely...15 KB (17 words) - 11:10, 11 August 2018
- one of the derivative chromosomes displays the phenotype, indicating that a cis-acting mechanism is responsible for this abnormal chromosomal phenotype. We...8 KB (1,082 words) - 08:32, 23 September 2008
- ChIP-enriched regions using Next-generation sequencing (MACS; Genome Biology 2008) and Affymetrix whole-genome tiling arrays, including 1) Model-based Analysis of...6 KB (7 words) - 09:33, 8 November 2009
- databases to create promoter architectures of *cis*-regulatory motifs. You can use PromoterCAD to mine for *cis*-regulatory motifs with a desired function...10 KB (1,349 words) - 02:30, 8 February 2013
- vectors and genomic clones. Genome Res. 2002 Sep;12(9):1434-44. DOI:10.1101/gr.130502 | PubMed ID:12213781 | HubMed [Wild-Genome-Res-2002] Kim UJ, Shizuya...12 KB (2,144 words) - 10:31, 20 April 2007
- About Projects Publications PersonalGenomes@Home Public Data FAQ Updates (12/23)...3 KB (11 words) - 11:42, 24 December 2008
- at 0.85. There's a lot of filtering options available. cisView has the results of a whole-genome scan for TFBSs with patterns from the literature, Jaspar...2 KB (180 words) - 15:28, 9 December 2007
- an ELAND format). The LW FDR seems to more resemble the concept used in CisGenome. I suppose I could try one then the other? First the MC, then. -iterations...9 KB (0 words) - 17:10, 26 September 2017
- About Projects Publications PersonalGenomes@Home Public Data FAQ Updates (12/23)...1 KB (11 words) - 11:42, 22 December 2008
- sequestered by the cis-repressed RNA loop. Design Background Our riboregulators consist of two interacting parts: cis and trans. The cis sequence is located...9 KB (8 words) - 12:45, 31 October 2007
- About Projects Publications PersonalGenomes@Home Public Data FAQ Updates (12/23)...2 KB (11 words) - 10:48, 23 December 2008
- About Projects Publications PersonalGenomes@Home Public Data FAQ Updates (12/23)...2 KB (11 words) - 11:56, 24 December 2008
- About Projects Publications PersonalGenomes@Home Public Data FAQ Updates (12/23)...1 KB (11 words) - 10:02, 26 December 2008
