This isn't a comprehensive list of all of Tom's publications but lists some of those that are more relevant to current research in the lab.
- Shetty RP, Endy D, and Knight TF Jr. . pmid:18410688.
- Norville JE, Kelly DF, Knight TF Jr, Belcher AM, and Walz T. . pmid:17638580.
- Knight TF Jr. . pmid:15545416.
- Knight TF. . pmid:16729055.
- Applying engineering principles to the design and construction of transcriptional devices by Reshma Shetty: thesis
- 2005 CSAIL Research Abstracts
- BioJADE: A Design and Simulation Tool for Synthetic Biological Systems by Jonathan A. Goler
- 2004 CSAIL research abstracts
- Fluorescence assay for polymerase arrival rates by Austin Che: thesis technical report
- Performance Limits for Chemical Computation by Geo Homsy
- DARPA BioComp Plasmid Distribution 1.00 of Standard Biobrick Components by Thomas F. Knight, Jr.
- Idempotent Vector Design for Standard Assembly of Biobricks by Thomas F. Knight, Jr.
- Amorphous Computing by Hal Abelson, Don Allen, Daniel Coore, Chris Hanson, George Homsy, Thomas F. Knight, Jr., Radhika Nagpal, Erik Rauch, Gerald Jay Sussman and Ron Weiss
- Cellular computation and communications using engineered genetic regulatory networks by Ron Weiss