IGEM:Caltech/2007/Notes

Background

Initial assignment

Week 1

Notes

• Notes

Week 2

Reading

1. Elowitz MB and Leibler S. . pmid:10659856. PubMed HubMed [repressilator]
2. Gardner TS, Cantor CR, and Collins JJ. . pmid:10659857. PubMed HubMed [toggle]
3. Adventures in Synthetic Biology

   [aisb]

Notes

• Audio
• Notes

Week 3

Reading

4. Fung E, Wong WW, Suen JK, Bulter T, Lee SG, and Liao JC. . pmid:15875027. PubMed HubMed [metabolator]
5. Ro DK, Paradise EM, Ouellet M, Fisher KJ, Newman KL, Ndungu JM, Ho KA, Eachus RA, Ham TS, Kirby J, Chang MC, Withers ST, Shiba Y, Sarpong R, and Keasling JD. . pmid:16612385. PubMed HubMed [artemisinic]
6. Anderson JC, Clarke EJ, Arkin AP, and Voigt CA. . pmid:16330045. PubMed HubMed [tumor]
7. You L, Cox RS 3rd, Weiss R, and Arnold FH. . pmid:15064770. PubMed HubMed [population]

Notes

• coming shortly

Week 4

Past Projects

• Berkeley: Bacterial Conjugation (Haile)
  • Video
  • Presentation
  • Wiki

• Davidson: Invertase
  • Video
  • Presentation
  • Wiki

• Edinburgh: Arsenic Detector (Tania)
  • Video
  • Presentation
  • Wiki

• Penn State: Freeze Tag
  • Video
  • Presentation
  • Wiki

• UCSF: Rewiring Chemotaxis
  • Video
  • Presentation
  • Wiki

• UT Austin: Edge Detection (Deborah)
  • Presentation
  • Wiki

Week 5

• FimE [8] (Haile)
• Crescentin [9] (Kat)
• T7 [10] (Deborah)
• SSM [11](Tania)
• Riboregulator [12] (Pradeep)

Papers

8. Ham TS, Lee SK, Keasling JD, and Arkin AP. . pmid:16534780. PubMed HubMed [fim]
9. Margolin W. . pmid:15043836. PubMed HubMed [shape]
10. Chan LY, Kosuri S, and Endy D. . pmid:16729053. PubMed HubMed [refactor]
11. Torres-Cruz J and van der Woude MW. . pmid:14617664. PubMed HubMed [phase]
12. Isaacs FJ, Dwyer DJ, Ding C, Pervouchine DD, Cantor CR, and Collins JJ. . pmid:15208640. PubMed HubMed [riboregulator]

Week 6

12. Isaacs FJ, Dwyer DJ, Ding C, Pervouchine DD, Cantor CR, and Collins JJ. . pmid:15208640. PubMed HubMed [riboregulator]
13. Court DL, Oppenheim AB, and Adhya SL. . pmid:17085553. PubMed HubMed [lambda]