Harvard:SysBio 204/2014
From OpenWetWare
Jump to navigationJump to search
Course overview
- A course focusing on the rational design, construction, and applications of nucleic acid and protein-based synthetic molecular and cellular machinery and systems. Students are mentored to produce substantial term projects.
- Intended for graduate students in Systems Biology, Biophysics, Engineering, Biology and related disciplines. No formal prerequisites. Projects are tailored to each student's strengths and interests.
- Website: http://sb204.net
- Poster
Midterm and Final
- There will be two midterms and one final project for this class
- Policy: strict submission deadline, we encourage you to submit your work the night before
- Midterm #1 due: October 3rd at noon
- Midterm #2 due: October 24th at noon
- Final project due: November 28
- Method of submission: email TA your slides and presentations
- Midterm and Final Projects (2013, to be updated)
Logistics
- Instructors: George Church, William Shih, Pamela Silver, Peng Yin
- Teaching Fellow: Evan Daugharthy
- Meeting time: 2:30 - 4:00 PM, Mon/Wed, Fall 2014
- Location: Room 521, Wyss Institute, 3 Blackfan circle, Boston, 02115
- First class on Wednesday Sep 3rd.
- Location: CLSB521
- No exams
- Prerequisites: none
- Grading
- 20% Participation
- 40% Midterm projects
- 40% Final project
- Harvard course site
Background Info and previous class projects
- BPH242r 2008-2009 http://openwetware.org/wiki/Biophysics_242r/2009 (Synthetic Biology)
- BPH242r 2010-2011 http://openwetware.org/wiki/Harvard:Biophysics_242r/2011 (Biologically Inspired Molecular Engineering)
- SB204 2011-2012 http://openwetware.org/wiki/Harvard:SysBio_204/2011
- SB204 2012-2013 http://openwetware.org/wiki/Harvard:SysBio_204/2012
- SB204 2013-2014 http://openwetware.org/wiki/Harvard:SysBio_204/2013
Example topics for final design project
- miRNA pattern recognition in eukaryotic cells
- Directed evolution of chemical sensors
- Nano-breadboards for probing electron transport in proteins
- Altered genetic codes and amino acid alphabets
- Modification of proteins for function in harsh environments
- Automatable assembly of large synthetic genes and circuits
- Synthetic biology of stem cells and epigenetic reprogramming pathways
- Structural re-engineering of adenoviruses
- Artificial chemotactic swimmers
- Nonequilibrium networks of nano-machines mimicking dynamic instability in the cytoskeleton
- Recombinase-based multi-state memory in bacteria
- Exosome manufacturing
- Self-assembled solar energy harvester based on bio-inorganic nano-antennae for uv-vis
- Systematic debugging of DNA labeling chemistries by atomic-resolution TEM imaging of DNA origami
- Transcriptional activation and repression through rational molecular design
- Tissue engineering scaffold nano-materials
- Programmable multistep chemical synthesis by templating on catalytic nanostructures
- Ultra-sensitive signal processing for synthetic biology
- Antibody 2.0
- Synthetic nanostructure - virus conjugates
- Replication of information in synthetic crystals
- Cheap large-scale production of protein or DNA-based materials
- Etc. Etc. Etc.
Recent changes
List of abbreviations:
- N
- This edit created a new page (also see list of new pages)
- m
- This is a minor edit
- b
- This edit was performed by a bot
- (±123)
- The page size changed by this number of bytes
23 April 2024
|
11:58 | BioMicroCenter:People 2 changes history +30 [Lttran (2×)] | |||
|
11:58 (cur | prev) −4 Lttran talk contribs (→BioMicro Center Staff) | ||||
|
11:49 (cur | prev) +34 Lttran talk contribs (→BioMicro Center Staff) |
11:46 | Upload log Lttran talk contribs uploaded File:SKR BMC.jpg |
22 April 2024
|
19:28 | "Pick and Place" Assembly of Parts Using PDMS - Amy Lim, Rylie Costello 4 changes history +1 [Rcostello (4×)] | |||
|
19:28 (cur | prev) −2 Rcostello talk contribs (→Nanowires) | ||||
|
19:26 (cur | prev) 0 Rcostello talk contribs (→Biology-Inspired Solution) | ||||
|
15:03 (cur | prev) +2 Rcostello talk contribs (→At the Microscale) | ||||
|
15:02 (cur | prev) +1 Rcostello talk contribs (→Overview) |
09:24 | CHEM-ENG590E:Wiki Textbook diffhist +16 Rcostello talk contribs (→Chapter 15 - Other Topics) |
09:24 | Move log Rcostello talk contribs moved page "Pick and Place" Assembly of Parts Using PDMS - Amy Lim to "Pick and Place" Assembly of Parts Using PDMS - Amy Lim, Rylie Costello |
08:59 | "Pick and Place" Assembly of Parts Using PDMS - Amy Lim diffhist −2,792 Rcostello talk contribs (→"Pick and Place" for Microfluidics) |
21 April 2024
22:55 | Lee:JC diffhist +24 Wooin Lee talk contribs (→2024) |
17:42 | Ernesto-Perez-Rueda:Publications diffhist +55 Ernesto Perez-Rueda talk contribs |
19 April 2024
|
21:58 | Hu 2 changes history +58 [Hugangqing (2×)] | |||
|
21:58 (cur | prev) −8 Hugangqing talk contribs | ||||
|
21:58 (cur | prev) +66 Hugangqing talk contribs |
18 April 2024
15:01 | Pan:Who we are diffhist +14 Taopan talk contribs |
|
15:00 | Pan:Methods 2 changes history +456 [Taopan (2×)] | |||
|
15:00 (cur | prev) +2 Taopan talk contribs | ||||
|
14:59 (cur | prev) +454 Taopan talk contribs |
|
14:56 | Pan:Publications 2 changes history +396 [Taopan (2×)] | |||
|
14:56 (cur | prev) +74 Taopan talk contribs | ||||
|
14:54 (cur | prev) +322 Taopan talk contribs |
13:03 | BioMicroCenter:Pricing diffhist +166 Challee talk contribs |
|
12:58 | BioMicroCenter:Singular Sequencing 2 changes history +124 [Challee (2×)] | |||
|
12:58 (cur | prev) +14 Challee talk contribs (→Things to Consider) | ||||
|
12:57 (cur | prev) +110 Challee talk contribs |
|
12:12 | BioMicroCenter:Tecan Freedom Evo 7 changes history +1,746 [Noelani Kamelamela (7×)] | |||
|
12:12 (cur | prev) +4 Noelani Kamelamela talk contribs | ||||
|
12:12 (cur | prev) +3 Noelani Kamelamela talk contribs | ||||
|
10:13 (cur | prev) +7 Noelani Kamelamela talk contribs (→verrity Chemagic 360) | ||||
|
10:08 (cur | prev) −42 Noelani Kamelamela talk contribs (→verrity Chemagic 360) | ||||
|
10:08 (cur | prev) +86 Noelani Kamelamela talk contribs (→verrity Chemagic 360) | ||||
|
09:34 (cur | prev) +23 Noelani Kamelamela talk contribs (→verrity Chemagic 360) | ||||
|
09:32 (cur | prev) +1,665 Noelani Kamelamela talk contribs |
11:42 | 3D Cell Culture - McLean Taggart, Emma Villares, Maximillian Marek, Scott LeBlanc, Adam Lyons and Jacob Belden diffhist −3 Sarah L. Perry talk contribs |
|
09:35 | BioMicroCenter 2 changes history +92 [Noelani Kamelamela (2×)] | |||
|
09:35 (cur | prev) +60 Noelani Kamelamela talk contribs | ||||
|
09:20 (cur | prev) +32 Noelani Kamelamela talk contribs |
09:32 | Upload log Noelani Kamelamela talk contribs uploaded File:Chemagic360.jpg (from manual) |
- Collaboration Policy added to Midterm and Final Page (8/27/14)