Gos

31 phylogenetic markers were identified by BLAST and HMM searches from the Global Ocean Survey read peptides. The marker sequences were then aligned and trimmed.

Peptides: 41,146,566
Markers identified: 154,102

dnaG:6965
frr:4315
infC:3998
nusA:8755
pgk:8406
pyrG:9827
rplA:5297
rplB:6268
rplC:4822
rplD:4330
rplE:4414
rplF:4153
rplK:3375
rplL:2586
rplM:3594
rplN:2903
rplP:3336
rplS:2886
rplT:2779
rpmA:1745
rpoB:21717
rpsB:5115
rpsC:5090
rpsE:4036
rpsI:3249
rpsJ:2181
rpsK:3014
rpsM:3156
rpsS:2292
smpB:3884
tsf:5614

Location

genbeo:/share/eisen/mwu/GOS

Data

global ocean survey peptides predicted from reads (not assemblies) Downloaded from Camera node1055647476825981279.fasta
Locally at genbeo /home/koadman/node1055647476825981279.fasta.gz

Blast

Ecoli markers blast search against the GOS peptides using CAMERA server

Markers

*.pep: markers identified

*.trim.aln: markers aligned and trimmed

*.nottrim.aln: markers aligned and not trimmed

Summary

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• File:Phylotypedistribution.png