Etchevers:Notebook/STRA6 in eye development/2009/08/03
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Actually done on August 1stMade a proper organization of new Dell in Paris lab. Installed Ubuntu from a live DVD just in case; this has more drivers on it, so will reconstitute what is necessary if need to reinstall. Have a dual boot but if choose XP it goes back to the former dual boot with Ubuntu that had been nested inside XP - fix that later. Also compiled FindPeaks. <html> <tt> heather@embryo:~/trunk$ ant fpsuite<br /> Buildfile: build.xml<br /> <br /> cleanfp: <br /> initfp: [mkdir] Created dir: /home/heather/trunk/jars/fp4 <br /> compile: [javac] Compiling <b>138 source files</b> to /home/heather/trunk/classes <br /> FindPeaks: [mkdir] Created dir: /home/heather/trunk/tmp [jar] Building jar: /home/heather/trunk/jars/fp4/FindPeaks.jar [delete] Deleting directory /home/heather/trunk/tmp <br /> SeparateReads: [mkdir] Created dir: /home/heather/trunk/tmp [jar] Building jar: /home/heather/trunk/jars/fp4/SeparateReads.jar [delete] Deleting directory /home/heather/trunk/tmp <br /> SortFiles: [mkdir] Created dir: /home/heather/trunk/tmp [jar] Building jar: /home/heather/trunk/jars/fp4/SortFiles.jar [delete] Deleting directory /home/heather/trunk/tmp <br /> GenomeViewer: [mkdir] Created dir: /home/heather/trunk/tmp [jar] Building jar: /home/heather/trunk/jars/fp4/AlignSlice.jar [delete] Deleting directory /home/heather/trunk/tmp <br /> ConvertToBed: [mkdir] Created dir: /home/heather/trunk/tmp [jar] Building jar: /home/heather/trunk/jars/fp4/ConvertToBed.jar [delete] Deleting directory /home/heather/trunk/tmp <br /> MaqPetToBed: [mkdir] Created dir: /home/heather/trunk/tmp [jar] Building jar: /home/heather/trunk/jars/fp4/MaqPetToBed.jar [delete] Deleting directory /home/heather/trunk/tmp <br /> BowtieToBedFormat: [mkdir] Created dir: /home/heather/trunk/tmp [jar] Building jar: /home/heather/trunk/jars/fp4/BowtieToBedFormat.jar [delete] Deleting directory /home/heather/trunk/tmp <br /> buildfp:<br /> <br /> fptestdata: [copy] Copying 1 file to /home/heather/trunk/jars/fp4 <br /> changelog: [copy] Copying 1 file to /home/heather/trunk/jars <br /> fpsuite: <br /> BUILD SUCCESSFUL<br /> Total time: 5 seconds<br /> heather@embryo:~/trunk$ <br /> </tt> </html>
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