User:Torsten Waldminghaus
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== CV == | == CV == | ||
| - | * | + | *since 2011: Professor for Synthetic Microbiology at [http://www.synmikro.com/en SYNMIKRO - Center for Synthetic Microbiology] of the Philipps-Universität Marburg (Germany) and PI of the [[Waldminghaus | Waldminghaus Lab]] |
| - | * | + | * 2007-2011: Postdoc at the Department of Cell Biology, Institute for Cancer Research, The Norwegian Radium Hospital, Oslo (Norway) in the lab of [[Skarstad|Kirsten Skarstad]] |
*2004-2007: PhD at the Ruhr-University Bochum (Germany) PhD-thesis: ‘RNA-thermometers in bacteria’ in the [http://www.ruhr-uni-bochum.de/mikrobiologie/ lab of Franz Narberhaus] | *2004-2007: PhD at the Ruhr-University Bochum (Germany) PhD-thesis: ‘RNA-thermometers in bacteria’ in the [http://www.ruhr-uni-bochum.de/mikrobiologie/ lab of Franz Narberhaus] | ||
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A bit more detailed I enjoy working on: | A bit more detailed I enjoy working on: | ||
* Regulation of replication in bacteria | * Regulation of replication in bacteria | ||
| - | * | + | * Synthetic chromosomes |
| - | * Searching funny patterns on chromosomes or in proteins | + | * Searching funny patterns on chromosomes or in proteins <cite>Line-2011</cite> |
==Publications== | ==Publications== | ||
<biblio> | <biblio> | ||
| + | #Line-2011 pmid=21219462 | ||
#Waldminghaus-2010-Gaubig pmid=20864473 | #Waldminghaus-2010-Gaubig pmid=20864473 | ||
#Waldminghaus-2010 pmid=20602746 | #Waldminghaus-2010 pmid=20602746 | ||
| Line 63: | Line 64: | ||
*[[/Strains|My strain list]] | *[[/Strains|My strain list]] | ||
| - | *[[/Primers|My primer list]] | + | *[[/qPCR-Primers|My qPCR-primer list]] |
| + | *[[/Primer|My primer list]] | ||
| + | *[[/ds-oligos|My double strand oligo list]] | ||
*[[/primer_calculation | primer concentrations]] | *[[/primer_calculation | primer concentrations]] | ||
| - | |||
*[http://www.blogger.com/profile/04081156472724317833 blogger profile] | *[http://www.blogger.com/profile/04081156472724317833 blogger profile] | ||
*[http://www.citeulike.org/user/TorstenWaldminghaus CiteULike library] | *[http://www.citeulike.org/user/TorstenWaldminghaus CiteULike library] | ||
| Line 84: | Line 86: | ||
*[[Hardcore PubMeding (advanced PubMed searching)]] | *[[Hardcore PubMeding (advanced PubMed searching)]] | ||
*[[OriC/ter ratio determination]] | *[[OriC/ter ratio determination]] | ||
| + | *[[Cell cycle analysis]] | ||
*[[Berkmen | Berkmen lab]] | *[[Berkmen | Berkmen lab]] | ||
*[[Mazel | Mazel lab]] | *[[Mazel | Mazel lab]] | ||
Current revision
Hi, my name is Torsten Waldminghaus, and I'm currently Postdoc at the Norwegian Radium Hospital in Oslo (Norway) in Skarstad lab. I was let to OpenWetWare by google, searching for certain protocols. I just started my Postdoc time and I'm going to set up a bunch of methods that have not been done in my new lab. So I benefit a lot from people sharing their protocols on the internet and thought it might be a good idea to also let the world participate on my wisdom and experince. That's why I'm here. If you still want to you can email me through OpenWetWare. Below I'll describe a bit more about myself and the stuff I'm interested in.
Contents |
CV
- since 2011: Professor for Synthetic Microbiology at SYNMIKRO - Center for Synthetic Microbiology of the Philipps-Universität Marburg (Germany) and PI of the Waldminghaus Lab
- 2007-2011: Postdoc at the Department of Cell Biology, Institute for Cancer Research, The Norwegian Radium Hospital, Oslo (Norway) in the lab of Kirsten Skarstad
- 2004-2007: PhD at the Ruhr-University Bochum (Germany) PhD-thesis: ‘RNA-thermometers in bacteria’ in the lab of Franz Narberhaus
- 2002-2004: Studies in bioinformatics at the University of applied science Berlin (Germany) Master-thesis: ‘In silico analysis and selection of RNA secondary structures’ at the Max Planck Institute for Infection Biology under supervision of Volker Patzel
- 1999-2002: Studies in biology at the Ernst-Moritz-Arndt-University Greifswald (Germany) Diploma-thesis: ‘Investigations on the expression of clpX in Bacillus subtilis’ at the Division for Microbial Physiology and Molecular Biology in the lab of Michael Hecker
- 1996-1999: Basic studies in biology at the University of Potsdam (Germany)
- 1996: Theological studies and volunteer at the International Torchbearer Bibleschool in Holsby Brunn (Sweden)
Grants and Awards
- 2008-2010: Two year postdoc grant of the German Research Council (DFG)
- 2008: Ruth Massenberg Prize of Ruhr-University Bochum (Germany) for outstanding PhD thesis
- 2008: Travel grant of FEMS
- 2006: Travel grant of Ruth und Gert Massenberg Stiftung
Research interests
In general I like bacteria and complex systems.
A bit more detailed I enjoy working on:
- Regulation of replication in bacteria
- Synthetic chromosomes
- Searching funny patterns on chromosomes or in proteins [1]
Publications
- Johnsen L, Flåtten I, Morigen, Dalhus B, Bjørås M, Waldminghaus T, and Skarstad K. . pmid:21219462.
- Gaubig LC, Waldminghaus T, and Narberhaus F. . pmid:20864473.
- Waldminghaus T and Skarstad K. . pmid:20602746.
- Waldminghaus T, Gaubig LC, Klinkert B, and Narberhaus F. . pmid:19535917.
- Waldminghaus T and Skarstad K. . pmid:19254745.
- Waldminghaus T, Kortmann J, Gesing S, and Narberhaus F. . pmid:18713019.
- Waldminghaus T, Gaubig LC, and Narberhaus F. . pmid:17647020.
- Waldminghaus T, Heidrich N, Brantl S, and Narberhaus F. . pmid:17630972.
- Narberhaus F, Waldminghaus T, and Chowdhury S. . pmid:16438677.
- Waldminghaus T, Fippinger A, Alfsmann J, and Narberhaus F. . pmid:16336122.
- Gerth U, Kirstein J, Mostertz J, Waldminghaus T, Miethke M, Kock H, and Hecker M. . pmid:14679237.
Links to follow
- http://reuter.mit.edu/dfgwiki wiki about german stipendiats abroad (in german)
- http://anabench.bcm.umontreal.ca/anabench/ nice starting point for computational biology stuff
- http://collections.plos.org/ploscompbiol/tensimplerules.php 10 rule collection for stuff important for scientist
Personal Links
- My strain list
- My qPCR-primer list
- My primer list
- My double strand oligo list
- primer concentrations
- blogger profile
- CiteULike library
- Protein gel and Western
OWW
- How to present research well
- Reviews
- OpenWetWare:Ideas
- /sandbox
- Affinity purification of antibodies
- ChIP-Chip E. coli
- Baby cell column
- Sodium azide
- Chromosomal DNA isolation from E. coli
- Temperature mixing formula
- Methylation analysis with qPCR
- Hardcore PubMeding (advanced PubMed searching)
- OriC/ter ratio determination
- Cell cycle analysis
- Berkmen lab
- Mazel lab
Lost and found protocols:
