User:Jarle Pahr/DNA
Analysis and quantification http://nucleicacids.bitesizebio.com/articles/how-to-identify-supercoils-nicks-and-circles-in-plasmid-preps/
Quick reference - Determining DNA concentration and purity: http://nucleicacids.bitesizebio.com/articles/dna-concentration-purity/
http://www.pathologyoutlines.com/topic/moleculardnapuranalyzingpurity.html
http://nanodrop.com/Library/CPMB-1st.pdf
Preticipation:
http://www.scienceboard.net/resources/protocols.asp?action=article&protocol_id=544&criteria=
Isolation:
DNA isolation methods anno 1999: http://rothlab.ucdavis.edu/protocols/DNA-from-Agarose-Review.html
Gel extraction by glass wool filtering: http://www.jcancer.org/v03p0093.htm
http://nucleicacids.bitesizebio.com/articles/10-tips-for-better-dna-gel-extraction-results/
http://nucleicacids.bitesizebio.com/articles/5-more-tips-for-dna-gel-extraction/
How alkalyine lysis works: http://bitesizebio.com/articles/the-basics-how-alkaline-lysis-works/
How to get better midiprep yields: http://nucleicacids.bitesizebio.com/articles/how-to-get-better-plasmid-midiprep-yields/
A menagerie of miniprep methods: http://bitesizebio.com/articles/a-menagerie-of-mini-prep-methods/
http://www.ncbi.nlm.nih.gov/pubmed/388356
A One-Step Miniprep for the Isolation of Plasmid DNA and Lambda Phage Particles: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0023457
http://nucleicacids.bitesizebio.com/articles/tech-clinic-3-dna-digestion-precipitation-and-clean-up/
http://arbl.cvmbs.colostate.edu/hbooks/genetics/biotech/manip/conc.html
http://bioinfoweb.com/Protocol-plasmid-DNA-isolation-by-alkaline-lysis-method-miniprep.htm
http://www.mobio.com/blog/2013/03/27/where-oh-where-did-my-dna-go-a-post-on-dna-cleanup/
Comparison of alkaline-lysis protocols:
Gel purification:
Centrifugal filtration: http://www.zenbiology.com/2012/03/06/dna-extraction-from-agarose-gels-centrifugal-filtration/
http://www.ncbi.nlm.nih.gov/pubmed/10094803
Physical data:
http://www.nordicbiosite.com/viewpage.aspx?pageid=33
Amplification:
PCR:
LAMP:
http://nar.oxfordjournals.org/content/28/12/e63.full
MLPA: http://en.wikipedia.org/wiki/Multiplex_ligation-dependent_probe_amplification
Misc.: