Synthetic Biology:Semantic web ontology: Difference between revisions
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This is a part of the effort to provide a standardized, extensible, scalable and machine-processable interface for the [http://parts.mit.edu/ Registry of Standard Biological Parts]. The ideas of the Semantic Web seem to provide a solution to this problem. The success of developing a Synthetic Biology ontology depends in part on a good definition of the [[Synthetic Biology:Abstraction hierarchy | BioBricks abstraction hierarchy]]. | This is a part of the effort to provide a standardized, extensible, scalable and machine-processable interface for the [http://parts.mit.edu/ Registry of Standard Biological Parts]. The ideas of the Semantic Web seem to provide a solution to this problem. The success of developing a Synthetic Biology ontology depends in part on a good definition of the [[Synthetic Biology:Abstraction hierarchy | BioBricks abstraction hierarchy]]. | ||
==Meetings== | |||
*First meeting | *First meeting | ||
:Tuesday (9/20/05) at 3pm, room 68-674; [[Synthetic Biology:SWO1minutes|minutes]] | :Tuesday (9/20/05) at 3pm, room 68-674; [[Synthetic Biology:SWO1minutes|minutes]] | ||
| Line 17: | Line 13: | ||
==Resources== | ==Resources== | ||
*[[Synthetic_Biology:Semantic_web_ontology/Design|Design]] | |||
*[[Synthetic_Biology:Semantic_web_ontology/Semantic_Web|Semantic Web]] | *[[Synthetic_Biology:Semantic_web_ontology/Semantic_Web|Semantic Web]] | ||
**[[Synthetic_Biology:Semantic_web_ontology/RDF|RDF]] | **[[Synthetic_Biology:Semantic_web_ontology/RDF|RDF]] | ||
| Line 28: | Line 25: | ||
*[[Synthetic_Biology:Semantic_web_ontology/Examples|Examples]] | *[[Synthetic_Biology:Semantic_web_ontology/Examples|Examples]] | ||
*[[Synthetic_Biology:Semantic_web_ontology/Software|Software]] | *[[Synthetic_Biology:Semantic_web_ontology/Software|Software]] | ||
*[[Synthetic_Biology:Semantic_web_ontology/Knowledge_representation|Knowledge representation]] | |||
*[[Synthetic_Biology:Semantic_web_ontology/Notes|Notes]] | *[[Synthetic_Biology:Semantic_web_ontology/Notes|Notes]] | ||
==Miscellaneous== | ==Miscellaneous== | ||
Revision as of 15:56, 20 September 2006
Overview
This is a part of the effort to provide a standardized, extensible, scalable and machine-processable interface for the Registry of Standard Biological Parts. The ideas of the Semantic Web seem to provide a solution to this problem. The success of developing a Synthetic Biology ontology depends in part on a good definition of the BioBricks abstraction hierarchy.
Meetings
- First meeting
- Tuesday (9/20/05) at 3pm, room 68-674; minutes
- Second meeting
- Friday (9/23/05) at 10am, room 68-121; minutes
Resources
Miscellaneous
- Architecture of the World Wide Web, Volume One
- Design Issues for the World Wide Web
- Object-oriented biology - application of object-oriented paradigm to Gene (from nodalpoint.org)
- SynBERC: Synthetic Biology Engineering Research Center is a multi-institution research effort to lay the foundation for synthetic biology, which aims to build biological components and assemble them into integrated systems to accomplish specific tasks
- DOI & LSID info
- IBM DiscoveryLink provides users with a virtual database to which they can pose arbitrarily complex queries, even though the actual data needed to answer the query may originate from several different sources, and none of those sources, by itself, is capable of answering the query (data integration)
Contact: Ilya Sytchev
This site is hosted on OpenWetWare and can be edited by all members of the Synthetic Biology community.
Making life better, one part at a time.
