Synthetic Biology:Semantic web ontology/Query

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Miscellaneous

  • RDF Query Survey - query language survey
  • A Comparison of RDF Query Languages from 2005-04-11
  • Redland Rasqal RDF Query Demonstration
  • Sesame RQL: a Tutorial
  • Algae an RDF Query Language used in the W3C Annotea Server
  • Life Sciences Queries - ESW Wiki
  • Yeast Hub query form
  • RDF Data Access Working Group (DAWG)
  • URIQA (URI Query Agent) is a model for knowledge discovery, both from authoritative sources as well as from arbitrary third party sources. It introduces an extension to the present web architecture used to indicate to a web server that it should resolve the specified URI in terms of knowledge about the resource denoted by that URI rather than in terms of a representation of the resource in question.
    • CBD - Concise Bounded Description
    • Semantic Web Methods for HTTP: URIQA extends the present web architecture by introducing the following new HTTP methods for interacting with an authoritative semantic web enabled web server:
      • MGET - return a concise bounded description of the resource denoted by the request URI
      • MPUT - add the statements contained in a concise bounded description of the resource, provided as input, to the (possibly empty) body of knowledge maintained about the resource denoted by the request URI
      • MDELETE - remove the statements contained in a concise bounded description of the resource, provided as input, from the existing knowledge maintained about the resource denoted by the request URI

RDQL

  1. RDQL - A Query Language for RDF - W3C submission
  2. RDQL Tutorial from phpxmlclasses project
  3. A Programmer's Introduction to RDQL - Jena tutorial

SPARQL

The SPARQL Protocol and RDF Query Language (SPARQL) is a query language and protocol for RDF.

REST conceptualizes (and HTTP standardizes) public interfaces; SPARQL standardizes how one interacts, ad hoc'edly and without central control, with arbitrary slices of someone else's data.

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