Streptomyces:Other Bits/Antibiotic and Resistance Marker Information: Difference between revisions

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{|cellspacing="5" cellpadding="0" style="width: 770px; border-collapse:collapse; border-top: 2px solid black" rules="rows" frame="hsides"
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! style="width:175px;" | Name || style="width:150px;" | Stock Concentration (mg/ml) || style="width:150px;"| Final Concentration (μg/ml) || style="width:100px;"| Usage in 10mL (μL) || Dissolve in
! style="width:175px;" | Name || style="width:150px;" | Stock Concentration (mg/ml) || style="width:150px;"| Final Concentration (μg/ml) || style="width:100px;"| Usage in 10mL (μL) || Dissolve in
|- style="text-align:center;"
|- style="text-align:center; border-top: 1px solid black"
| Ampicillin || 100 || 100 || 10 || sdH<sub>2</sub>0
| Ampicillin || 100 || 100 || 10 || sdH<sub>2</sub>0
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{|cellspacing="5" cellpadding="0" style="width: 770px; border-collapse:collapse; border-top:hidden; border-top:2px solid black;" rules="rows" frame="hsides"
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|- style="text-align:center; border-top:1px solid black;" valign="top"  
|- style="text-align:center;" valign="top"  
! style="width:130px;" | E.coli Strain || style="width:120px;" | Plasmid / Cosmid || style="width:120px;"| E.coli Resistance Marker || style="width:100px;"| Plasmid Resistance Marker || Temperature Sensitive Replicon (ts)
! style="width:130px;" | E.coli Strain || style="width:120px;" | Plasmid / Cosmid || style="width:120px;"| E.coli Resistance Marker || style="width:100px;"| Plasmid Resistance Marker || Temperature Sensitive Replicon (ts)
|- style="text-align:center;"
|- style="text-align:center; border-top:1px solid black;"
| BW25113 || pIJ790 (λRED) || None || ''cat'' || Replication @ 30&#176;C, <br/>Loss of λRED @ 37&#176;C
| BW25113 || pIJ790 (λRED) || None || ''cat'' || Replication @ 30&#176;C, <br/>Loss of λRED @ 37&#176;C
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| || pIJ773 || || ''acc(3)IV'' ||
| || pIJ773 || || ''acc(3)IV'' ||
|}
===Antibiotic Genes & Information===
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! style="width:225px;" | Antibiotic Name || style="width:125px;" | Gene Name || style="width:125px;"| Type || Common Form
|- style="text-align:center; border-top:1px solid black;"
| Ampicillin || ''bla'' || Bactericidal || Sodium
|- style="text-align:center;"
| Apramycin || ''aac(3)IV'' || Aminoglycoside || Sulphate
|- style="text-align:center;"
| Carbenicillin || ''bla<sub>carb</sub>'' || Bactericidal || DiSodium
|- style="text-align:center;"
| Chloramphenicol || ''cat'' || Bacteriostatic ||
|- style="text-align:center;"
| Erythromycin || ''ermE'' || Macrolides ||
|- style="text-align:center;"
| Hygromycin B || ''hph'' || Aminoglycoside ||
|- style="text-align:center;"
| Kanamycin / Neomycin || ''neo'' || Aminoglycoside || MonoSulphate
|- style="text-align:center;"
| Nalidixic Acid || Synthetic || Bacteriostatic ||
|- style="text-align:center;"
| Spectinomycin / Streptomycin || ''aadA'' || Aminocyclitol || DiHydrochloride Pentahydrate
|- style="text-align:center;"
| Tetracyclin || ''Tet'' || Aminoglycoside || Hydrochloride
|- style="text-align:center;"
| Thiostrepton || ''tsr'' || Aminoglycoside ||
|- style="text-align:center;"
| Viomycin || ''vph'' || Aminoglycoside? || Sulphate
|- style="text-align:center;"
| Vancomycin B || ''vanB'' || Glycopeptide || Hydrochloride
|}
|}


Revision as of 04:11, 27 July 2007

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Antibiotic Concentrations and Usage

Name Stock Concentration (mg/ml) Final Concentration (μg/ml) Usage in 10mL (μL) Dissolve in
Ampicillin 100 100 10 sdH20
Apramycin 100 50 5 sdH20
Chloramphenicol 25 25 10 50%-100% EtOH
Hygromycin 50 25 5 sdH20
Kanamycin 100 50 5 sdH20
Nalidixic Acid 25 25 10 0.2M NaOH
Thiostrepton(e) 50 50 10 100% DMSO or 1:1 DMSO:EtOH
Viomycin 30 30 10 sdH20


E.coli Strain & Plasmid Resistance Markers

E.coli Strain Plasmid / Cosmid E.coli Resistance Marker Plasmid Resistance Marker Temperature Sensitive Replicon (ts)
BW25113 pIJ790 (λRED) None cat Replication @ 30°C,
Loss of λRED @ 37°C
DH5α None N/A
DH5α BT340 (FLP Recombinase) None cat / blacarb Initial Replication @ 30°C,
Induction of FLP Recombinase & loss of plasmid @ 42°C,
Post recombination growth @37°C
ET12567 [dam-13::Tn9] pUZ8002 cat neo
SuperCos 1 neo / blacarb
pIJ773 acc(3)IV


Antibiotic Genes & Information

Antibiotic Name Gene Name Type Common Form
Ampicillin bla Bactericidal Sodium
Apramycin aac(3)IV Aminoglycoside Sulphate
Carbenicillin blacarb Bactericidal DiSodium
Chloramphenicol cat Bacteriostatic
Erythromycin ermE Macrolides
Hygromycin B hph Aminoglycoside
Kanamycin / Neomycin neo Aminoglycoside MonoSulphate
Nalidixic Acid Synthetic Bacteriostatic
Spectinomycin / Streptomycin aadA Aminocyclitol DiHydrochloride Pentahydrate
Tetracyclin Tet Aminoglycoside Hydrochloride
Thiostrepton tsr Aminoglycoside
Viomycin vph Aminoglycoside? Sulphate
Vancomycin B vanB Glycopeptide Hydrochloride



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