Smolke:Protocols/Ligation: Difference between revisions
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*In general, I do not purify or concentration my ligation products. In the one instance where I did, I simply got 40 instead of 3 negative colonies, suggesting that I was concentrating a rare background product. However, it seems that other people in the lab have had good results using purified and/or concentrated ligation products. --YC | *In general, I do not purify or concentration my ligation products. In the one instance where I did, I simply got 40 instead of 3 negative colonies, suggesting that I was concentrating a rare background product. However, it seems that other people in the lab have had good results using purified and/or concentrated ligation products. --YC | ||
**Concentration will concentrate everything - you get more positives and more negatives. So if your problem is too few colonies this will help. If the problem is a high background, you're better off redoing the digest/CIP/extraction process. -Josh | **Concentration will concentrate everything - you get more positives and more negatives. So if your problem is too few colonies this will help. If the problem is a high background, you're better off redoing the digest/CIP/extraction process. -Josh | ||
**My point is that, in my experience, the cloning will either work or not work, and concentrating the ligation has not made a deference | **My point is that, in my experience, the cloning will either work or not work, and concentrating the ligation has not made a deference. --YC | ||
*If you do wish to concentrate the ligation, make sure you either do phenol-chloroform extraction or use a column and not just concentrate with the speed vac. | *If you do wish to concentrate the ligation, make sure you either do phenol-chloroform extraction or use a column and not just concentrate with the speed vac. | ||
*If you're not cleaning up the ligation, it should be heat inactivated (65C for 10-20 minutes) before transformation. -Josh | *If you're not cleaning up the ligation, it should be heat inactivated (65C for 10-20 minutes) before transformation<cite>ymer</cite>. -Josh | ||
**I actually never heat inactivate the ligation before transformation, but this is not a bad idea if you plan to keep the ligation product for potential repeats in transformation. --YC | **I actually never heat inactivate the ligation before transformation, but this is not a bad idea if you plan to keep the ligation product for potential repeats in transformation. --YC | ||
==References== | |||
<biblio> | |||
#ymer pmid=1762931 | |||
</biblio> |
Revision as of 14:41, 15 October 2009
General setup
Reaction time
Concentration and purification after ligation
References |