Sean Clarke/109 notes: Difference between revisions
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! gVI | ! gVI | ||
| 2856-3194 || small hydrophobic part of the capsid || | | 2856-3194 || small hydrophobic part of the capsid || 112 || 12264 | ||
|- | |- | ||
! gV | ! gV | ||
| Line 34: | Line 34: | ||
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! gVII | ! gVII | ||
| 1108-1209 || || 33 | | 1108-1209 || probably involved in phage assembly || 33 | ||
|- | |- | ||
! | ! gI | ||
| || probably involved in phage assembly | | 3196-4242 || probably involved in phage assembly || 348 || 35000 in vitro, 39500 predicted | ||
|- | |||
! gIV | |||
| 4220-5500 || phage assembly?, 23 nt overlap with gI, RBS 4204-27 || 426 || 45791 | |||
|} | |} | ||
*p3,p8,p9 = virion structural proteins, p3 and p8 have N-term signal peptides that are hydrophobic | *p3,p8,p9 = virion structural proteins, p3 and p8 have N-term signal peptides that are hydrophobic | ||
Revision as of 13:11, 15 January 2007
M13 genome
6407 bp single-stranded circular DNA
filamentous, male-specific? coliphage
related to fd and f1
9? coding genes
| position | notes | size (aa) | MW | |
|---|---|---|---|---|
| gIII | 1579-2853(1?) | capsid protein A, precursor has 18 extra aa, coding seq starts at 1633 | 424/408 | 42675 |
| gVIII | 1301-1525 | encodes precursor w/23 extra N-term aa, pVIII is major virion capsid protein B | ||
| gIX | 1206-1304(2?) | overlaps g8 by 1 nt, small virion capsid protein (C-protein) | 32 | |
| gVI | 2856-3194 | small hydrophobic part of the capsid | 112 | 12264 |
| gV | 843-1106 | helix-destabilizing protein in ss viral DNA synthesis | ||
| gII | 6006-831 | req'd for dsDNA replication | 410 | 46,117 |
| gX | 496-831 | in frame with and initiated within g2 | 12,670 | |
| gVII | 1108-1209 | probably involved in phage assembly | 33 | |
| gI | 3196-4242 | probably involved in phage assembly | 348 | 35000 in vitro, 39500 predicted |
| gIV | 4220-5500 | phage assembly?, 23 nt overlap with gI, RBS 4204-27 | 426 | 45791 |
- p3,p8,p9 = virion structural proteins, p3 and p8 have N-term signal peptides that are hydrophobic
