Pecinka lab

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
(40 intermediate revisions not shown.)
Line 1: Line 1:
{{Template:Pecinka Lab}}
{{Template:Pecinka Lab}}
-
{| {| class="wikitable" width="100%" cellspacing="2px" cellpadding="0" border="0" style="padding:10px;color:#000000;background-color:#ffffff;"
+
{| {| class="wikitable" width="100%" cellspacing="2px" cellpadding="0" border="0" style="padding:20px;color:#000000;background-color:#ffffff;"
|-valign="top"
|-valign="top"
-
|style="padding: 5px;">; background-color: #ffffff; border: 2px solid #9ACD32;" |
+
|style="padding: 25px;">; background-color: #ffffff; border: 2px solid #9ACD32;" |
<h3><font style="color:#31B404;">Research</font></h3>
<h3><font style="color:#31B404;">Research</font></h3>
-
The goal of the Pecinka lab is to understand molecular mechanisms shaping plant genomes. To this end we use the model plant ''Arabidopsis thaliana'' and several other ''Brassicaceae'' and analyze them by using forward and reverse genetics, molecular, biochemical, cytogenetic and bioinformatic methods.
 
-
Pecinka lab is hosted by the [http://www.mpipz.mpg.de/10574/koornneef-dpt Department of Plant Breeding and Genetics] at the [http://www.mpipz.mpg.de/2169/en Max Planck Institute for Plant Breeding Research] in Cologne, Germany.
+
The Pecinka lab is hosted by the [http://www.mpipz.mpg.de/10574/koornneef-dpt Department of Plant Breeding and Genetics] at the [http://www.mpipz.mpg.de/2169/en Max Planck Institute for Plant Breeding Research] in Cologne, Germany.
-
Our wiki site was developed under [http://openwetware.org/wiki/Main_Page OpenWetWare], an open access effort to promote sharing of information among biologists.
 
 +
Our goal is to understand molecular and evolutionary mechanisms shaping plant genomes and epigenomes. We analyze how DNA sequence variation is generated by various mutagenic factors and how these forces are counteracted by the genome repair and maintenance mechanisms. To this end we use the model plant ''Arabidopsis thaliana'' and several other ''Brassicaceae'' and analyze them by forward and reverse genetics, molecular, biochemical, cytogenetic and bioinformatic methods.
[[Pecinka_lab:Research | read more...]]
[[Pecinka_lab:Research | read more...]]
-
 
|rowspan=2 width=200px style="padding: 5px; background-color: #ffffff; border: 0px solid #4169E1;" |
|rowspan=2 width=200px style="padding: 5px; background-color: #ffffff; border: 0px solid #4169E1;" |
Line 17: Line 15:
*[[Pecinka_lab:Ahmed_Abdelsamad|Ahmed Abdelsamad]]
*[[Pecinka_lab:Ahmed_Abdelsamad|Ahmed Abdelsamad]]
 +
*[[Pecinka_lab:Andreas_Finke|Andreas Finke]]
*[[Pecinka_lab:Chun Hsin Liu|Chun Hsin Liu (Phoebe)]]
*[[Pecinka_lab:Chun Hsin Liu|Chun Hsin Liu (Phoebe)]]
*[[Pecinka_lab:Ales_Pecinka|Ales Pecinka]]
*[[Pecinka_lab:Ales_Pecinka|Ales Pecinka]]
*[[Pecinka_lab:Bjoern_Pietzenuk|Björn Pietzenuk]]
*[[Pecinka_lab:Bjoern_Pietzenuk|Björn Pietzenuk]]
*[[Pecinka_lab:Thomas_Piofczyk|Thomas Piofczyk]]
*[[Pecinka_lab:Thomas_Piofczyk|Thomas Piofczyk]]
-
*[[Pecinka_lab:Giang Vu|Giang Vu]]
 
-
<h3><font style="color:#4169E1;">Visiting Students</font></h3>
+
<h3><font style="color:#4169E1;">Guest Scientists</font></h3>
-
*[[Pecinka_lab:Pawel_Mikulski|Pawel Mikulski]]
+
*[[Pecinka_lab:Nawratan_Bagwan|Navratan Bagwan]]
-
*[[Pecinka_lab:Miriam_Schleinitz|Miriam Schleinitz]]
+
*[[Pecinka_lab:Sabine_Le_Gall|Sabine Le Gall]]
 +
 
<h3><font style="color:#4169E1;">Technitians</font></h3>
<h3><font style="color:#4169E1;">Technitians</font></h3>
-
*[[Pecinka_lab:Barbara_Eilts|Barbara_Eilts]]
+
*[[Pecinka_lab:Barbara_Eilts|Barbara Eilts]]
*[[Pecinka_lab:Petra_Pecinkova|Petra Pecinkova]]
*[[Pecinka_lab:Petra_Pecinkova|Petra Pecinkova]]
Line 40: Line 39:
|-
|-
|  
|  
-
{| cellspacing="2px" cellpadding="0" border="0" style="padding: 0px; width: 700px; color: #000000; background-color: #ffffff;"
+
{| cellspacing="2px" cellpadding="0" border="0" style="padding: 0px; width: 800px; color: #000000; background-color: #ffffff;"
|-valign="top"
|-valign="top"
-
|width=400px rowspan=3 style="padding: 5px; background-color: #ffffff; border: 0px solid #FF8C00;" |
+
|width=530px rowspan=3 style="padding: 5px; background-color: #ffffff; border: 0px solid #FF8C00;" |
<h3><font style="color:#FF8C00;">Recent Publications</font></h3>  
<h3><font style="color:#FF8C00;">Recent Publications</font></h3>  
-
*Pecinka A, Mittelsten Scheid O. Stress-induced chromatin changes: A critical view on their heritability. Plant Cell Physiology doi: 10.1093/pcp/pcs044 (2012). [http://pcp.oxfordjournals.org/content/early/2012/03/28/pcp.pcs044.abstract]  
+
*de Meaux J, Pecinka A. The Arabidopsis genus: An emerging model to elucidate the molecular basis of interspecific differences in transposable element activity. Mobile Genetic Elements 2:142-144 (2012). [[media:deMeaux-MES-2012.pdf| PDF]]
-
*Alcázar R, Pecinka A, Aarts MGM, Fransz PF, Koornneef M. Signals of speciation within Arabidopsis thaliana in comparison with its relatives. Curr Opin Plant Biol 15:205-211 (2012). [http://www.sciencedirect.com/science/article/pii/S1369526612000039]
+
*Pecinka A, Mittelsten Scheid O. Stress-induced chromatin changes: A critical view on their heritability. Plant Cell Physiology doi: 10.1093/pcp/pcs044 (2012). [[media:Pecinka-PCP-2012.pdf| PDF]]
-
*Pecinka A, Fang W, Rehmsmeier M, Levy AA, Mittelsten Scheid O. Polyploidization increases meiotic recombination frequency in Arabidopsis. BMC Biology 9:24 (2011). [http://www.biomedcentral.com/1741-7007/9/24]
+
*Alcázar R, Pecinka A, Aarts MGM, Fransz PF, Koornneef M. Signals of speciation within Arabidopsis thaliana in comparison with its relatives. Curr Opin Plant Biol 15:205-211 (2012). [http://www.sciencedirect.com/science/article/pii/S1369526612000039 abstract]
-
*Pecinka A, Dinh HQ, Rosa M, Baubec T, Lettner N, Mittelsten Scheid O. Epigenetic control of repetitive elements is attenuated by prolonged heat stress in Arabidopsis. Plant Cell 22: 3118–3129 (2010). [http://www.plantcell.org/content/22/9/3118.full]
+
*Pecinka A, Fang W, Rehmsmeier M, Levy AA, Mittelsten Scheid O. Polyploidization increases meiotic recombination frequency in Arabidopsis. BMC Biology 9:24 (2011). [[media:Pecinka-BMCPB-2011.pdf| PDF]]
*[[Pecinka_lab:Publications|see complete list...]]
*[[Pecinka_lab:Publications|see complete list...]]
-
|width=200px style="padding: 5px; background-color: #ffffff; border: 0px solid #F8B603;" |
+
|width=300px style="padding: 5px; background-color: #ffffff; border: 0px solid #F8B603;" |
-
<h3><font style="color:#F8B603;">Seminars</font></h3>
+
<h3><font style="color:red">News</font></h3>
-
*[[Pecinka_lab:Group_meeting| Meetings, journal clubs, seminars]]
+
*2013-05-02: Seeking for an outstanding candidate to apply for a research fellowship with UV-B-biology related project. [[Pecinka_lab:Open positions| more]]
-
|-valign="top"
+
*2013-04-22: New post-doc Andreas Finke joined the group
-
|style="padding: 5px; background-color: #ffffff; border: 0px solid red;" |
+
*2013-02-05: Next-generation sequencing grant from the Max Planck Society approved for funding.
 +
*2013-02-05 - 07: Pecinka lab organized COST Action UV4Growth school "Molecular toolkit for applied UV-B research"  
-
<h3><font style="color:red">News</font></h3>
 
-
*2012-03-28: The review on Stress-Induced Chromatin Changes was published in PCP [http://pcp.oxfordjournals.org/content/early/2012/03/28/pcp.pcs044.abstract]
 
-
*2012-01: The review by Alcazar et al. on Signals of speciation in Arabidopsis and its relatives was published in COPB [http://www.sciencedirect.com/science/article/pii/S1369526612000039]
 
-
*2011-09: Grant on Epigenetic Control of Repetitive DNA in ''Arabidopsis lyrata'' funded by DFG
 
|}
|}
|}
|}
__NOTOC__
__NOTOC__

Revision as of 03:48, 2 May 2013

Image:LablogoAP2.tif


Home      Research      People      Publications      Protocols      Resources      Seminars      Positions      Lab life     


Research

The Pecinka lab is hosted by the Department of Plant Breeding and Genetics at the Max Planck Institute for Plant Breeding Research in Cologne, Germany.


Our goal is to understand molecular and evolutionary mechanisms shaping plant genomes and epigenomes. We analyze how DNA sequence variation is generated by various mutagenic factors and how these forces are counteracted by the genome repair and maintenance mechanisms. To this end we use the model plant Arabidopsis thaliana and several other Brassicaceae and analyze them by forward and reverse genetics, molecular, biochemical, cytogenetic and bioinformatic methods. read more...

Lab Members

Guest Scientists


Technitians


see complete list...


openwetware.org-wiki-Pecinka_Lab-thumb.jpg

Recent Publications

  • de Meaux J, Pecinka A. The Arabidopsis genus: An emerging model to elucidate the molecular basis of interspecific differences in transposable element activity. Mobile Genetic Elements 2:142-144 (2012). PDF
  • Pecinka A, Mittelsten Scheid O. Stress-induced chromatin changes: A critical view on their heritability. Plant Cell Physiology doi: 10.1093/pcp/pcs044 (2012). PDF
  • Alcázar R, Pecinka A, Aarts MGM, Fransz PF, Koornneef M. Signals of speciation within Arabidopsis thaliana in comparison with its relatives. Curr Opin Plant Biol 15:205-211 (2012). abstract
  • Pecinka A, Fang W, Rehmsmeier M, Levy AA, Mittelsten Scheid O. Polyploidization increases meiotic recombination frequency in Arabidopsis. BMC Biology 9:24 (2011). PDF

News

  • 2013-05-02: Seeking for an outstanding candidate to apply for a research fellowship with UV-B-biology related project. more
  • 2013-04-22: New post-doc Andreas Finke joined the group
  • 2013-02-05: Next-generation sequencing grant from the Max Planck Society approved for funding.
  • 2013-02-05 - 07: Pecinka lab organized COST Action UV4Growth school "Molecular toolkit for applied UV-B research"


Personal tools