Pecinka Lab:Resources: Difference between revisions
Ales Pecinka (talk | contribs) No edit summary |
Ales Pecinka (talk | contribs) No edit summary |
||
| Line 12: | Line 12: | ||
[http://www.bar.utoronto.ca/efp/cgi-bin/efpWeb.cgi?dataSource=Developmental_Map&modeInput=Relative&primaryGene=At1g01010&secondaryGene=None&modeMask_low=None&modeMask_stddev=None EXPRESSION DATA in eFP BROWSER]. Even your grandma will understand gene expression with this tool. | [http://www.bar.utoronto.ca/efp/cgi-bin/efpWeb.cgi?dataSource=Developmental_Map&modeInput=Relative&primaryGene=At1g01010&secondaryGene=None&modeMask_low=None&modeMask_stddev=None EXPRESSION DATA in eFP BROWSER]. Even your grandma will understand gene expression with this tool. | ||
[www.bar.utoronto.ca/efp/cgi-bin/efpWeb.cgi?dataSource=Developmental_Map&modeInput=Relative&primaryGene=At1g01010&secondaryGene=None&modeMask_low=None&modeMask_stddev=None GENEVESTIGATOR]. Gene expression analysis center containing more datasets than eFP browser and also several other tools. Requires registration. | [http://www.bar.utoronto.ca/efp/cgi-bin/efpWeb.cgi?dataSource=Developmental_Map&modeInput=Relative&primaryGene=At1g01010&secondaryGene=None&modeMask_low=None&modeMask_stddev=None GENEVESTIGATOR]. Gene expression analysis center containing more datasets than eFP browser and also several other tools. Requires registration. | ||
[http://www.1001genomes.org/ 1001 GENOMES], [http://signal.salk.edu/atg1001/3.0/gebrowser.php SALK 1001 GENOMES BROWSER]. Great source of data for natural variation analysis. | [http://www.1001genomes.org/ 1001 GENOMES], [http://signal.salk.edu/atg1001/3.0/gebrowser.php SALK 1001 GENOMES BROWSER]. Great source of data for natural variation analysis. | ||
Revision as of 12:51, 7 June 2012
|
|
Centre of Plant Structural and Functional Genomics |
Publicly Available Arabidopsis Software Tools
TAIR. The basic source of information (not only) for Arabidopsis.
AtENSEMBL. Basic Arabidopsis genome browser. Handy for checking available mutants and their quick ordering because of link to the NASC collections.
SALK SIGnAL. Bunch of resources for Arabidopsis work, e.g. T-DNA orientation finder, 'SALK Epigenome' etc.
EXPRESSION DATA in eFP BROWSER. Even your grandma will understand gene expression with this tool. GENEVESTIGATOR. Gene expression analysis center containing more datasets than eFP browser and also several other tools. Requires registration.
1001 GENOMES, SALK 1001 GENOMES BROWSER. Great source of data for natural variation analysis.
'UCLA Epigenome', 'SALK Epigenome'. Genome-wide distribution of many diagnostic chromatin marks in Arabidopsis at the websites run by the Jacobsen/Pellegrini's labs or SALK institute, respectively.
R
R and RSTUDIO. Downloads, documentation, help etc. Some easy to understand help can be found also on Quick-R.
