Haynes Lab:Notebook/Synthetic Biology and Bioinformatics for Predictable Control of Therapeutic Genes/2012/05/28: Difference between revisions

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*I can now do a better check on a wider variety of cell types since I have the needed check regions
*I can now do a better check on a wider variety of cell types since I have the needed check regions
*Sidenote: HUVEC comes from epithelial cells which is naturally higher in signal value.
*Sidenote: HUVEC comes from epithelial cells which is naturally higher in signal value.
[[Image:Screen_Shot_2012-05-29_at_2.19.52_AM.png]]
[[Image:Screen_Shot_2012-06-06_at_5.50.43_PM.png]]




Revision as of 17:52, 6 June 2012

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  • In order to get more accurate signal value readings for hotspots (not raw signal) I defined regions 250 bps to the left and right of the promoter region of each housekeeping gene. Below are the results I obtained. I can now redo GALAXY for BJ and HUVEC.
  • I can now do a better check on a wider variety of cell types since I have the needed check regions
  • Sidenote: HUVEC comes from epithelial cells which is naturally higher in signal value.



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