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| <h3>Courses</h3>
| | [[Beauchamp:TeachingOld|Archive of Previous Teaching Page]] |
| <h4>2013</h4>
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| NBA Seminar Series Available Dates:
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| [[Beauchamp:AvailableDates]] | |
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| GS14 1181: Graduate Neuroanatomy
| | ==Learning more about Neuroimaging== |
| Fall/annually/1-credit hour course. The Graduate Neuroanatomy course will provide a broad overview of the structure and function of the central nervous system. The general architecture of the nervous system and its functional systems are presented in a series of online exercises. The exercises allow the students to examine brain anatomy at a detailed view of the regional anatomy of the brain and spinal cord. MRIs of brain anatomy, as commonly presented in the scientific literature, will be presented using a computerized learning system. [[Beauchamp:GraduateNeuroanatomy|Click here for web page for Graduate Neuroanatomy Course]]
| | To learn more about neuroimaging, consider the two course sequence taught by David Ress and Michael Beauchamp at Baylor College of Medicine. |
| | ===Fundamentals of Human Neuroimaging=== |
| | The first course in the sequence, taught in the Fall (Terms 1 and 2) is directed by David Ress. It is primarily a lecture course survey of neuroimaging methods and results. In 2014, the course was offered on Tuesdays and Thursdays from 10:50am to 12:05 pm. The course schedule may change in the future, please contact Dr. Ress for schedule information. This course is listed as a BCM course (GS-NE-400) and is cross-listed at Rice as NEUR 430. |
| | Goals and learning objectives: |
| | #Develop familiarity with basic neuroanatomy and electrophysiology. |
| | #Understand the physical basis of magnetic resonance imaging of tissue structure, including the nuclear magnetic resonance, contrast mechanisms, image acquisition, signal processing, and scanner hardware. |
| | #Understand the physiology of neurovascular coupling, and explore its effects on both optical signals and MRI. |
| | #Understand basic concepts, hardware, and analysis of positron emission tomography. |
| | #Become familiar with neuroscience imaging experiment design, analysis, and results, particularly as they are applied human vision science. |
| | Neuroscience elective. 3 Credits for 2 terms (Terms 1 and 2). T/Th. Prerequisites: Introductory Calculus and Physics at the freshman level. |
| | Course director: David Ress, Ph.D. |
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| | ===Advanced Functional Magnetic Resonance Imaging Laboratory=== |
| | The second course in the sequence, taught in the Spring, is directed by Michael Beauchamp, course director. The course is listed as BCM GS-NE-472 (350-472) and is cross-listed as Rice Psychology 585. This is a limited enrollment course focussed on practical MRI techniques. Students will collect and analyze MRI data. The course is designed for graduate students, fellows, and others actively collecting MRI data for a research project. The course is typically taught on Wednesdays from 9am to 11:30am. This is a 2 credit course with Pass/Fail grading. The prerequisite is completion of the first course in the sequence, GS-NE-400 (above) and permission of instructor. The course is taught in Term 4. In 2016, the dates for this term are March 14 - May 13, 2016 (last class day May 6). |
| | #3/16/16 CAMRI Safety Training (if not already completed). 10 - 10:45, CAMRI Conference Room. |
| | #3/23/16 |
| | #3/30/16 |
| | #4/6/16 |
| | #4/13/16 |
| | #4/20/16 |
| | #4/27/16 |
| | #5/4/16 |
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| <h4>2012</h4>
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| Here are slides presented in June 2012 at the Institute of Psychology of the Chinese Academy of Sciences
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| #[[media:BeijingJune2012.pdf.pdf|Institute of Psychology of the Chinese Academy of Sciences]]
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| Here are slides presented for Medical Neuroscience in 2012
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| #[[media:2012Integrated.pdf|Integrated Motor Systems]]
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| #[[media:2012MotorCortex.pdf|Motor Cortex]]
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| #[[media:2012SpinalCord.pdf|Spinal Cord]]
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| #[[media:2012PreLab8.pdf|Prelab slides for Lab #8]]
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| #[[media:2012PreLab9.pdf|Prelab slides for Lab #9]]
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| Click here for [[Beauchamp:MedNSLab|Teaching Material for Medical Neuroscience Laboratory Course]]
| | ====Course Details==== |
| | | Students will need to take an MRI safety course offered by CAMRI. |
| UT Graduate Cognitive Neuroscience (Anne Sereno, course director)
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| #[[media:SerenoLecture1.pdf|Lecture #1, Methods of Cognitive Neuroscience]]
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| #[[media:SerenoLecture2.pdf|Lecture #2, Object Recognition]]
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| <h4>2011</h4>
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| BCM Higher Brain Function (Mariela DeBiasi, course director)
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| #[[media:DeBiasiLecture1.pdf|Lecture #1]]
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| #[[media:DeBiasiLecture2.pdf|Lecture #2]]
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| #[[media:fMRIEducatedConsumer.pdf|fMRI Educated Consumer Slides]]
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| #[[Beauchamp:WUES|Information about West U Elementary School Science Night]]
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| #[[media:BasalGanglia.ppt|Basal Ganglia MRI Slides for "crowdsource" labeling]]
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| Here are slides presented for Medical Neuroscience in 2011
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| #[[media:2011Lecture1.pptx|Neuroimaging]]
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| #[[media:2011MotorLecture1.pdf|Motor System Lecture #1]]
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| #[[media:2011MotorLecture2.pdf|Motor System Lecture #2]]
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| #[[media:2011MotorLecture3.pdf|Motor System Lecture #3]]
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| #[[media:2011MotorLecture4.pdf|Motor System Lecture #4]]
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| #[[media:2011MotorLecture5.pdf|Motor System Lecture #5]]
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| #[[media:2011MotorLecture6.pdf|Motor System Lecture #6]]
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| #[[media:2011PreLab8.pdf|Prelab slides for Lab #8]]
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| #[[media:2011PreLab9.pdf|Prelab slides for Lab #9]]
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| <h5>2011 Lab 7 Notes</h5>
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| The NeuroLab CD contains incorrect information on the location of the frontal eye fields. This PDF shows the correct location
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| [[media:Lab7FrontalEyeFields.pdf|FrontalEyeFields]]
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| <h5>2011 Lab 8 Notes</h5>
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| Many of the structures in Lab 8 can be seen on MRI. The following PDF contains labeled MRI sections.
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| [[media:Lab8MRI.pdf|Lab8MRI]]
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| <h5>2010 Lecture Slides</h5>
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| Here are slides presented for Introduction to Neuroimaging on January 22, 2010
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| [[media:2010Lecturev2.pptx|Neuroimaging]]
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| Here are slides presented for Motor System Lecture #1 (muscles) on March 17, 2010
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| [[media:Lecture1.pptx|Motor Systems Lecture #1]]
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| Here are slides presented for Motor System Lecture #2 (spinal reflexes) on March 17, 2010
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| [[media:Lecture2.pptx|Motor Systems Lecture #2]]
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| Here are slides presented for Motor System Lecture #3 (motor cortex) on March 19, 2010
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| [[media:Lecture3.pptx|Motor Systems Lecture #3]]
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| Here are slides presented for Motor System Lecture #4 (basal ganglia) on March 22, 2010
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| [[media:Lecture4.pptx|Motor Systems Lecture #4]]
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| Here are slides presented for Motor System Lecture #5 (cerebellum) on March 24, 2010
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| [[media:Lecture5.pptx|Motor Systems Lecture #5]]
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| Here are slides presented for Prelab #9 (descending pathways) on March 29, 2010
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| [[media:PreLab9.pptx|Prelab #9]]
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| <h5>Other Notes</h5>
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| A teaching website that shows midbrain, brainstem and spinal cord slices labeled with tracts and anatomy is
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| http://isc.temple.edu/neuroanatomy/lab/
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| A website that shows labeled brain anatomy from the Visible Human project is
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| http://www.netanatomy.com
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| A free iPhone app from the Cold Spring Harbor Laboratory allows 3D visualization of brain structures
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| http://itunes.apple.com/us/app/3d-brain/id331399332?mt=8
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| A web-based version of the same app may be seen at
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| http://www.g2conline.org/
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| misc teaching notes:
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| [[Beauchamp:MedNSLabNotes]]
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| <h4>MS4 Neuroimaging Elective: BSCI 4008</h4>
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| [[Beauchamp:NeuroimagingElective|Web page for fourth-year neuroimaging elective]]
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| ==AFNI/fMRI Short Course== | |
| Dr. Bob Cox, the Director of the Scientific and Statistical Computing Core at the National Institute of Mental Health Intramural Research Program will be visiting Houston on October 4-8, 2010. Together with his staff, Dr. Cox will teach a 5-day course on fMRI data analysis with the AFNI software package.
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| [[Beauchamp:ShortCourse2010|Click for more information on the short course]]
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| ==Introduction to fMRI==
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| The course is taught in <b>even years only</b>.
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| The web page for students in this course to submit assignments and receive information about the course is
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| https://owlspace-ccm.rice.edu/portal
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| For 2012 - 2013, this course will be offered on Monday afternoons from 2 pm to 5 pm in UT MSB B.100
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| The first class will be Monday September 10 and the last class will be Monday December 10th. There will be no class on October 15th (Society for Neuroscience annual meeting).
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| This course is intended for graduate students, post-doctoral fellows and faculty who are interested in using fMRI for their research. A small number of undergraduates may also enroll in the course solely at the discretion of the instructor (only undergraduates who are currently working in a laboratory that uses functional MRI study will be considered). The course is primarily offered through the University of Texas Graduate School of Biomedical Sciences GSBS 140053 (http://www.uthouston.edu/gsbs/current-students/academics/course-listing/courses/neuroscience/gs140053-introduction-to-functional-magnetic-resonance-imaging-.htm). The course is also cross-listed at Rice University in the Psychology and Bioengineering departments (as Psych 579 and BioE 571) and in the Baylor College of Medicine Graduate School of Biological Sciences (as GS-NE-439) (http://neuro.bcm.edu/?sct=neuro_think&gp=cdescript). If you are a student at UT, Rice or Baylor contact your registrar for enrollment information.
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| If you are a student at University of Houston, it is probably easiest to enroll in the course via cross-registration through Rice University. (UT requires vaccination records for cross-registration which is annoying). However, if you would like to enroll through UT, please visit this web page for information about enrolling in the course:
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| http://registrar.uth.tmc.edu/Registration/ConcurEnrollment.html
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| The textbook for this course is "Functional Magnetic Resonance Imaging", <b>2nd edition</b>, by Huettel, Song and McCarthy.
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| The text may be ordered from Amazon
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| http://www.amazon.com/Functional-Magnetic-Resonance-Imaging-Second/dp/0878932860
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| or it is available at the UT bookstore at a 10% discount. For more information on the UT bookstore:
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| https://www.webmedbooks.com/uthouston/content/contact.aspx
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| <h4>Other Courses and Lectures</h4>
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| A second course offered by Dr. Beauchamp is titled "Advanced Seminars in Neuroimaging". This is an advanced course for students who have already taken Introduction to fMRI.
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| Click here for information about a lecture on fMRI delivered at Texas Children's Hospital on December 2nd, 2009:
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| [[Beauchamp:TCH|TCH Lecture]]
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| A GSBS course on MRI physics is shown here
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| http://www.uthgsbsmedphys.org/GS02-0193/default_2009.htm
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| [[media:IUTalk.pdf|Lecture at Indiana University in February of 2004]]
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| <h5>Potential Seminar Speakers</h4>
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| Alice O'Toole
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| Angie Laird
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| [[Beauchamp:Soccer|Soccer Stuff]]
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