Beauchamp:HowToScan: Difference between revisions
From OpenWetWare
Jump to navigationJump to search
No edit summary |
|||
(11 intermediate revisions by the same user not shown) | |||
Line 6: | Line 6: | ||
= How to Scan = | = How to Scan = | ||
For full details, see [[CAMRI:HowToScan| CAMRI wiki on how to scan]] | |||
next step is [[Beauchamp:CreateAFNIBRIKfromMR|Getting raw data from the scanner]] | next step is [[Beauchamp:CreateAFNIBRIKfromMR|Getting raw data from the scanner]] | ||
== | == Using the fORP == | ||
For Beauchamp Lab experiments, do the following: | |||
# Push in fORP front button | |||
# Go to changes modes, select YES | |||
# Select Autoconfigure | |||
# Scroll down to HID NAR BYGRT, Select | |||
# Confirm that Mode is 002 in top right of display | |||
This gives a trigger as a T rather than a 5. An extra step needs to be taken to make sure that the right USB device is selected in Matlab (from the three possibilities). | |||
== Accessing Pulse Sequences == | |||
To access pulse sequences, Click on Ctrl-Esc and select the "Advanced User" program. Type in the password (meduser1). Then go back, and open a Windows Explorer window. The pulse sequences are located under | To access pulse sequences, Click on Ctrl-Esc and select the "Advanced User" program. Type in the password (meduser1). Then go back, and open a Windows Explorer window. The pulse sequences are located under | ||
C:/medcom/mricustomer/seq | C:/medcom/mricustomer/seq | ||
Line 34: | Line 25: | ||
DiffusionVectors.txt | DiffusionVectors.txt | ||
== Using Real-Time == | |||
If the real-time is not working, make sure you are using the correct pulse sequence (VB17rt EPI). Also check the tabs computer (MacPro): | If the real-time is not working, make sure you are using the correct pulse sequence (VB17rt EPI). Also check the tabs computer (MacPro): | ||
#Change user to admin_local | #Change user to admin_local | ||
$ su admin_local | $ su admin_local | ||
# Kill afni: | # Kill afni: | ||
Line 42: | Line 34: | ||
#You can check the log on the scanner for hints: | #You can check the log on the scanner for hints: | ||
Type logviewer from the command prompt. | Type logviewer from the command prompt. | ||
More stuff on real-time: | More stuff on real-time: |
Latest revision as of 14:21, 24 July 2015
How to ScanFor full details, see CAMRI wiki on how to scan next step is Getting raw data from the scanner Using the fORPFor Beauchamp Lab experiments, do the following:
This gives a trigger as a T rather than a 5. An extra step needs to be taken to make sure that the right USB device is selected in Matlab (from the three possibilities). Accessing Pulse SequencesTo access pulse sequences, Click on Ctrl-Esc and select the "Advanced User" program. Type in the password (meduser1). Then go back, and open a Windows Explorer window. The pulse sequences are located under C:/medcom/mricustomer/seq The diffusion vectors are stored in the file DiffusionVectors.txt Using Real-TimeIf the real-time is not working, make sure you are using the correct pulse sequence (VB17rt EPI). Also check the tabs computer (MacPro):
$ su admin_local
$ kill -9 'cat /Uses/tabs/tabs/var/afni.pid'
Type logviewer from the command prompt. More stuff on real-time:
|