User talk:Darek Kedra/sandbox 7

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CSB2007

FlowerPower is a protein homology clustering algorithm, similar to PSI-BLAST in its iterated approach to alignment, profile construction, and homolog identification, but with distinct differences. More information.

  • EDGEdb C.elegans differentially expressed gene database

Proteiomics

Align

http://www.ncbi.nlm.nih.gov/pubmed/17332019

Ancestral seq reconstruction

http://prodata.swmed.edu/ancescon/ancescon.php

Clusters

  • CLANS (Java) @Tubingen graph based
  • ProClust (France) also graph based
  • MCL / Ortho-MCL HMM-based