User:Pisanu Buphamalai/Notebook/TF affininties vs nuleosome affinities/2011/09/15
|TF affinities vs nucleosome affinities||Main project page|
1. The original file is large so it was split and compressed. Decompressed the files and combine them in R or notepad.
2. Find correlation of TF affinities vs nucleosome affinities, for different categories (max, avg, med). That is, correlate column 3 to 6, 4 to 7, and 5 to 8. Do they give the same/different results?
3. How many types of correlation coefficients are available (e.g. Pearson, Spearman)? Do they return similar coefficient?
4. Do the three nucleosome affinity types (column 6-8) significantly different from one another? What statistic can be used to assess?