User:Nuri Purswani/Notebook/ICBioinfp1/2010/02/01

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QUESTIONS FOR ADVISORS

  • Are we supposed to build a database?- what is the use of us doing this from scratch when there are models available!
    • feedback- MIT database, inaccessible, not bad!- Improve querying/not redesign?
    • Composite parts: Sum of individual parts!!
  • What is wrong with the way that the registry is using DAS?
    • Comparing to other points/ is the wrong part that the registry doesn't let you access external sources?
    • Ask about the API links (XML)- list of entry points, others dont work!
  • What they want us to do in general1
    • MIT ID= limited to MIT
    • DAS queries- not universal
    • Creating a biobrick part- get seq from external source and put in registry, loosing all info from external source.
    • We want to t retrieve that info by creating some sort of "link"
    • HOW?
    • Biobrick ID= only registry
    • Only way to link to external servers- through the sequence!
  • WHY BIOSQL!?- USE THE TEMPLATE!

FEEDBACK FROM GERAINT

-mysql, postgres? - tomcat server- flex. type in url- go to tomcat, etc. (?) --flash objs in flex, put in tomcat. jsp mydb.jsp. - how big database?¿ --few 1000 entries? bss server/web? flex-tomcat-jsp-database. arrghhhhhhh! dazzle- fits into tomcat somewheereee python? jango?

-flex/tomcat/java/mysql

-"BLAST-IN, BLAST OUT!!"

  • STEP1: Build a database "TOY"- parts registry- parser- get info out- plug into SQL (bio/not)?--- design a schema!
    • Use the schema that the registry has- biojade schema. ?
  • STEP2: Querying? How to get info out?
  • GUI- Send queries to the server.
  • AIMS- BUILD A TOY DATABASE- SQL/MYSQL- SCHEMA?

DECIDE ON AIMS FOR TOMORROW