User:Morgan G. I. Langille/Notebook/Halophiles/2010/08/05

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16s idea

Genome Sizes

  • Corrected the genome size and number of contigs (and scaffolds) for the genome information table.
  • Would like to have a figure of read length density for all 8 genomes.
    • To get read length I thought I would have to use sff_extract script to change sff files into fasta files (using -c option to trim sequences). However, I found that the assembly folders on Rob's site has files called 254Trimstatus.txt that has the read length for each read.