User:Kelvin Li/Notebook/2014-spring-140L/2014/02/18

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Organism

Translation table

Bacterial, Archaeal and Plant Plastid Code

  AAs  = FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG
Starts = ---M---------------M------------MMMM---------------M------------
Base1  = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
Base2  = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
Base3  = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG

Amino acyl tRNA synthetases

valyl-tRNA synthetase

  • Protein Sequence:
MAELSTRYNPAEIETKWYRYWEEKGYFTPKGVGEKFSIVIPPPNITGRIHMGHALNITLQDIVVRYKRMK
GYDVLWVPGEDHAGIATQNAVEKFLLQTQGKTREEIGREKFLEITWEWANKYRREIREQIKALGASVDWT
RERFTLDEGLSRAVRKVFVELYRKGLIYRGKYIVNWCPRCKTVLSDEEVEHKEHKSKLYYVKYPVKDSDE
YIVVATTRPETMLGDTAVAVHPEDERYKNFVGKTLILPLVGREIPVVADKYVDPKFGTGAVKVTPAHDPN
DYLIAQRHNLPMIEIFDDNARINENGGKYKGLDRYEAREKIVKDLEEQGFLVKIEDYTHSVGHCYRCDTV
IEPKLSDQWFVSTKPLAKRAIEAVENGEIRFFPERWTKVYLNWMYEIRDWCISRQLWWGHRIPVWYCQDC
GHLNVSEEDVEKCEKCGSTNLKQDEDVLDTWFSSALWPFSTLGWPEETEDLKRYYPTDLLVTGFDIIFFW
VARMIMMGYEFMNDKPFSHVYIHQLVRDKYGRKMSKSLGNGIDPLEVIDEYGADPMRFTLAILAAQGRDI
KLDPRYFDAYKKFANKIWNATRFVLMNLEDYKEVPLENLKTVDKWILTRLNKTVEEVTNALENYDFNIAA
RTIYNFFWDDFCDWYIEASKPRLKTEERNLVQTVLVKVLDASLRLLHPFMPFLTEELWQKLPVAGESITI
AKWPEIERELIDETAEKEFTRLMNMVRGVRNVRAEMNLPQSQRVKVYIKGYEVTEEEELLLKTLGNIEEV
SFVNEKPPKTATAYVEEEIEAYVDLGGLIDFEKEKERLKQIMEKIQKEIDRLEKKLANKDFVEKAPEEVV
EETKEKLNTNRERLARLESILRDLE

threonyl-tRNA synthetase

  • Protein Sequence:
MKIKVKLPDGKEKEYDRGITPAEIAKELGIKKAIGAVVNGELWDLKRPIENDCELRLVTLEDPEAPEFYR
HTMAHILAQAVMRLYGKENVKLGIGPTIENGFYYDFDIKNGRLTEEDLPKIEQEMKKIIKENLPIERKEI
SKEEARELFRDQPYKLELIEEIEGNRVTIYRQGEFVDLCRGPHLPSTGIVKHFKLLSVSGAYWRGSEKNP
MLTRVYGTAFAKKEDLDNYLKFLEEAQRRDHRKLGPQLELFMLNTEYAPGMPFFLPKGVVVLNELMKFSR
ELHRERGYQEIFTPLIMNEQLWKISGHWDHYAENMYFIEKDEERYAVKPMNCPGHILVYKSRTVSYRDLP
LRFFEFGRVHRYERSGVLHGLMRVRSFTQDDAHIFCTPDQIEEEILGVLDLINTIYSQFGFTYRVELSTM
PEDHMGDEAIWEKATTALKNALERAGLSYKVNEGEGAFYGPKIDFHIRDSIGREWQCATIQLDFMMPEKF
NVTYIGPDNKEHRAVMIHRAIYGSLERFFGILIEHFAGAFPTWLAPIQVAVIPISEKHNDGAEKVARRIS
QEGFRVFFDNRRETLGYRIRQAQTQKIPYMIIIGDKELESGKISVRTRTGKEIKDVDPEHFVETLRNEVL
SRKLELSMEG