User:Jorge E. Buendia Buendia/Notebook/iGEM UNAM-Genomics-Mexico/2010/08/03

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Augus3rd, 2010

1. Run gel to verify extracted plasmids, PstI and EcoRI-PstI restrictions made on July 7th.

TestConstructions1 3Aug2010.JPG

Lanes: 1) Ladder; 2) Plasmid L1; 3) Plasmid L2; 4) Plasmid L4, 5) Plasmid L5; 6) Plasmid L6; 7) p18; 8) p19; 9) p30; 10) L1 PstI; 11) L2 PstI; 12) L4 PstI; 13) L5 PstI; 14) L6 PstI; 15) Ladder.

TestConstructions2 3Aug2010.JPG

Lanes: 1) Ladder; 2) p18 PstI; 3) p19 PstI; 4) p30 PstI; 5) L1 EcoRI-PstI; 6) L2 EcoRI-PstI; 7) L4 EcoRI-PstI; 8) L5 EcoRI-PstI; 9) L6 EcoRI-PstI; 10) p18 EcoRI-PstI; 11) p19 EcoRI-PstI; 12) p30 EcoRI-PstI; 13) Ladder.


2. Make PCR to test constructions: L2: p30-MinBP + GFP BBa_K145015 (74 min); L4: Backbone plasmid pSB3K3 + Blue Promoter BBa_K238013 + GFP BBa_K145015 (74 min).

  • PCR will be done with Taq polymerase, and with primers Preff FWD-Suff REV and BluePromoter FWD-BluePromoter REV.
  • Tubes are marked 1-5 as follows:
  1. L2 Preff FWD-Suff REV
  2. L4 Preff FWD-Suff REV
  3. L2 BluePromoter FWD-BluePromoter REV
  4. L4 BluePromoter FWD-BluePromoter REV
  5. Positive control using L1 with Preff FWD-Suff REV
  • PCR with Taq DNA polymerase
Reactive (ul x sample)
Taq Polymerase -> 1
Taq Reaction Buffer 10X -> 5
MgCl 50mM (can be used up to 3ul) -> 2.5
dNTP’s 0.4ug/ul -> 2.5
Primer Forward (can be used up to 3ul) -> 2.5
Primer Reverse (can be used up to 3ul) -> 2.5
HPLC -> 32
DNA -> 2
Total volume -> 50
  • Thermocycler program:
1. 95ºC 5 min
2. 35 cycles
  • 95ºC 45 seg
  • 60ºC 45 seg
  • 72ºC 1.5 min
3. 72ºC 5 min
4. Hold 4ºC