User:James Estevez/Notebook/Spring 2011: Bdellovibrio Independent Study/2011/02/03

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pSORTb

It seems that the problem might have been that the packages were 32-bit. I installed Bio-Linux 5 in VirtualBox and ran the B. marinus analysis in that. Took less time than I expected, even allowing for having to run it in a virtual machine. Posted results to S3, will start data analysis once I figure out how to handle the Strain W contigs. I think that only using predicted genes from the largest ones might be the way to go but I need to read bit before I ask MM how to proceed. Started setting up the R script, so I also need to decide whether to treat the pSORTb predictions as discrete or continuous given the confidence scores.

  1. B. Marinus SJ predictions (comma delimited)


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