H3K27me3 Markers TSS sites
Chromosome |
Gene |
TSS+250 |
TSS-250 |
Signal
|
13 |
PDX1 |
28493908 |
28494408 |
85.24
|
6 |
GLP1R |
39016307 |
39016807 |
20.72
|
8 |
MAFA |
144509980 |
144510480 |
140.76
|
5 |
PCSK1 |
95725790 |
95726290 |
1
|
12 |
IAPP |
21525552 |
21526052 |
2
|
20 |
KCNQ2 |
62031317 |
62031817 |
4
|
- Dr. Haynes: What does "Signal" mean in this table?
Table Browser Protocol (UCSC)
- Go to UCSC Table Browser http://genome.ucsc.edu/cgi-bin/hgTables?hgsid=356574357
- Clade to Mammal, Genome to Human, Assembly to Mar. 2006 (hg18)
- Dr. Haynes: Try Feb. 2009 (hg19)
- Track to UW Histone
- Dr. Haynes: What did you set table to?
- Region defined as TSS+250 and TSS-250 above. Format of Defining region as:
chrX |
TSS-250 |
TSS+250 |
gene name
|
chr13 |
28493908 |
28494408 |
PDX1
|
- Output format to "selected fields from primary and related tables." Click get output
- Select: chrom, chromStart, chromEnd, name and signalValue
Dr. Haynes: When I set "table" to H1-hESC H3K27m3 (wgEncodeBroadHistoneH1hescH3k27me3StdPk), I got the following output for PDX1
#chrom |
chromStart |
chromEnd |
name |
signalValue |
[Gene]
|
chr13 |
28468953 |
28571921 |
. |
52.9896 |
PDX1
|
Results
No results found, none of genes found with UW histone markers.
|