User:Daniela A. Garcia S./Notebook/Modeling 2011 UNAM Genomics-Mexico/2011/04/15

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Model Description for COBRAToolbox

The S of E. coli is a matrix where most of the entries have a value equal to 0; when loaded in MatLab S is displayed has a set of coordinates, which represent reactants and products.

  • The lower and upper values for each compound give information about the reactions fluxes, if the reaction is irrevesible the lower and upper values are 0 and >0 respectively.
  • The vector c indicates the reaction or process under study.
  • Rules contains the genetic information of the system, genes are involved in the production of the proteins which take part in a reaction.

From the flux balance analysis, information about the physiological conditions and enzimatic capacities would be obtained, there are no temporal curses in S.


  • No idea of what the vector b is.