User:Daniela A. Garcia S./Notebook/Modeling 2011 UNAM Genomics-Mexico/2011/04/15

Project name

Main project page Previous entry      Next entry

Model Description for COBRAToolbox The S of E. coli is a matrix where most of the entries have a value equal to 0; when loaded in MatLab S is displayed has a set of coordinates, which represent reactants and products. The lower and upper values for each compound give information about the reactions fluxes, if the reaction is irrevesible the lower and upper values are 0 and >0 respectively. The vector c indicates the reaction or process under study. Rules contains the genetic information of the system, genes are involved in the production of the proteins which take part in a reaction. From the flux balance analysis, information about the physiological conditions and enzimatic capacities would be obtained, there are no temporal curses in S. Note No idea of what the vector b is.