User:Carl Boettiger/Notebook/Comparative Phylogenetics/2010/08/10

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Likelihood ratio update

  • Sent drafts of Likelihood ratio paper to Peter Wainwright (Sunday 08/08) and Graham Coop (Monday 08/09)

Wrightscape

  • Sent Peter more information on the release of constraint results in the Labrid system.
  • Starting wrightscape manuscript.

Changes to wrightscape.R

  • added a tree plotting function to the wrighttree class.
  • labels on parameter bootstrap distributions for labrids in last week's entry reversed wrasses and parrotfish. I've updated the software so that the plotting function takes care of the labeling automatically (when these were made it had to be added manually, while the automation of the data conversions and the painting by clade reversed the label assignments).