User:Carl Boettiger/Notebook/Comparative Phylogenetics/2010/05/31

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CSGF Survey

  • Wrote survey. Getting feedback and will send out this week.

previous comments

Wiki Tricks

Exploring use of mvs to download and upload entries from openwetware. The mediawiki client is easy to install as described in the link. Doesn't seem to have a tool to grab everything in my Notebook namespace, but with a little bash script I can grab all the entries in a particular notebook:


<syntaxhighlight lang="bash">

  1. ! /bin/bash

mvs login -d openwetware.org -u Carl_Boettiger -w index.php

for j in `seq 3 5`; { for i in `seq 1 9`; do mvs update User\:Carl_Boettiger/Notebook/Comparative_Phylogenetics/2010/0$j/0$i.wiki done

for i in `seq 10 31`; do mvs update User\:Carl_Boettiger/Notebook/Comparative_Phylogenetics/2010/0$j/$i.wiki done } </syntaxhighlight>

  • login should specify -p password (omitted here for obvious reasons)
  • For some reason can't get commit to push changes back up. (See the link above for examples on how to commit data).

Error:

 Doing commit User:Carl_Boettiger.wiki with host: openwetware.org and lang: en
 Can't call method "isa" without a package or object reference at /usr/bin/mvs line 96.