User:Carl Boettiger/Notebook/Comparative Phylogenetics/2010/03/16

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Graham & Peter Meeting

  • Discussed inverse problem approach.
  • Discussed bootstrapping likelihoods directly vs bootstrapping likelihood ratio
  • Integrating over uncertainty in the likelihood assignment


Research Progress

  • Completed writing the bootstrapping function for the partition scheme,
  • ouch2ape function completed for converting ouch tree formats back to ape. modifies code from r-forge
  • More details and log on the repository

Goals for Wainwright meeting tomorrow

  1. Repeat Labrid Fin analysis with tripartition
  2. Bootstrap likelihood ratio functions


Misc

Thinking about nominations for EVE Seminar speaker

  • Aaron King
  • Joe Felsenstein
  • Marc Mangel
  • Luke Harmon
  • Richard McElreath
  • co-sponsor Katia Koelle