NickColeman-lab:Publications

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http://coleman-lab.org/

Book chapters

  1. Coleman N.V. (2015) Primers for aerobic chlorinated hydrocarbon degraders. In Hydrocarbon and Lipid Microbiology Protocols: Methods to Detect Specific Individuals and Groups in Communities. Terry J. McGenity, Kenneth N. Timmis and Balbina Nogales (Eds.). Springer. <a href="https://link.springer.com/protocol/10.1007/8623_2015_91" </a>

​​Journal articles

  1. Graziotto, M.E., Akerfeldt, M.C, Gunn, A.P., Yang, K., Somerville, M.V., Coleman, N.V., Roberts, B.R., Hambley, T.W, New, E.J. (2017) The influence of the ethane-1,2-diamine ligand on the activity of a monofunctional platinum complex. J. Inorg.Biochem. doi: 10.1016/j.jinorgbio.2017.07.029 <a href="https://www.ncbi.nlm.nih.gov/pubmed/28789807" </a>
  1. Munro J.E, Kimyon Ö, Rich D.J, Koenig J, Tang S, Low A, Lee M, Manefield M, Coleman N.V. (2017) Co-occurrence of genes for aerobic and anaerobic biodegradation of dichloroethane in organochlorine-contaminated groundwater. FEMS Microbiol Ecol. doi: 10.1093/femsec/fix133 Impact Factor 3.88 <a href="https://www.ncbi.nlm.nih.gov/pubmed/29040474" </a>
  1. Waring, C. L., Hankin, S. I., Griffith, D. W. T., Kertesz, M. A., Kobylski, V., Wilson, N. L., Coleman, NV, Kettlewell, G, Zlot, R, Bosse, M, Bell, G. (2017). Seasonal total methane depletion in limestone caves. Nature Scientific Reports, 7(1), 8314. doi: 10.1038/s41598-017-07769-6. Impact factor 4.26 <a href="https://www.ncbi.nlm.nih.gov/pubmed/28814720" </a>
  1. Dingsdag S.A., Nelson S., Coleman N.V. (2016) Bacterial communities associated with apical periodontitis and dental implant failure. Microb. Ecol. in Health and Disease 27:31307. Impact factor 3.80. <a href="https://www.ncbi.nlm.nih.gov/pubmed/27834171" </a>
  1. Munro J.E., Liew E.F., Ly M.A., Coleman N.V. (2016) A new catabolic plasmid in Xanthobacter and Starkeya spp. from a 1,2-dichloroethane-contaminated site. Appl Environ Microbiol. 82:5298-5308. Impact factor 3.67. <a href="https://www.ncbi.nlm.nih.gov/pubmed/27342553" </a>
  1. Coleman N.V. (2016) The iGEM competition: research-led teaching in microbiology. Microbiology Australia 37:81-83. <a href="http://www.publish.csiro.au/ma/Fulltext/MA16028" </a>
  1. Fung H.K., Gadd M.S., Drury T.A., Cheung S., Guss J.M., Coleman N.V., Matthews JM (2015). Biochemical and biophysical characterisation of haloalkane dehalogenases DmrA and DmrB in Mycobacterium strain JS60 and their role in growth on haloalkanes. Mol Microbiol. 97:439-453. Impact factor 3.76 <a href="https://www.ncbi.nlm.nih.gov/pubmed/25899475" </a>
  1. Coleman N.V., Munro , J.E., Rich, D.J., Dingsdag, S. (2014). Wastewater, wheat and table wipes: adventures in culture-independent microbiology. Microbiology Australia. 35: 188-191 <a href="http://www.publish.csiro.au/ma/Fulltext/MA14061" </a>
  1. Martin K.E., Ozsvar J, Coleman N.V. (2014) SmoXYB1C1Z of Mycobacterium NBB4: an sMMO-like monooxygenase, active on C2-C4 alkanes and alkenes. Appl Environ Microbiol. 80:5801-5806 Impact factor 3.67 <a href="https://www.ncbi.nlm.nih.gov/pubmed/25015887" </a>
  1. Liew E.F., Tong D., Coleman N.V., Holmes A.J. (2014) Mutagenesis of the hydrocarbon monooxygenase indicates a metal centre in subunit-C, and not subunit-B, is essential for copper-containing membrane monooxygenase activity. Microbiology. 160:1267-1277. Impact factor 2.27. <a href="https://www.ncbi.nlm.nih.gov/pubmed/24682027" </a>
  1. Coleman, N.V., Richardson-Harris, J, Wilson, N.L, and A.J. Holmes (2014). Insertion sequence ISPst4 activates pUC plasmid replication in Pseudomonas stutzeri. FEMS Microbiol. Lett. 356:242-249. Impact factor 1.89. <a href="https://www.ncbi.nlm.nih.gov/pubmed/24606121" </a>
  1. Munro, J.E., Liew, E.F, and N.V. Coleman (2013). Adaptation of a membrane bioreactor to 1,2-dichloroethane revealed by 16S rDNA pyrosequencing and dhlA qPCR. Environ. Sci. Technol. 47(23):13668-76. Impact factor 5.39. <a href="https://www.ncbi.nlm.nih.gov/pubmed/24175727" </a>
  1. Cheung S, McCarl, V., Holmes, A.J., Coleman, N.V., and Rutledge, P.J. (2013) Substrate range and enantioselectivity of epoxidation reactions mediated by the ethene-oxidising Mycobacterium strain NBB4. Appl Microbiol Biotechnol. 97:1131-40. Impact factor 3.38. <a href="https://www.ncbi.nlm.nih.gov/pubmed/22410742" </a>
  1. Coleman, N.V., Le, N.B., Ly, M.A., Ogawa, H.E., McCarl, V., Wilson, N.L., and Holmes, A.J (2012) Hydrocarbon monooxygenase in Mycobacterium: recombinant expression of a member of the ammonia monooxygenase superfamily. ISME Journal. 6:171-182. Impact factor 9.33. <a href="https://www.ncbi.nlm.nih.gov/pubmed/21796219" </a>
  1. Dingsdag, S. and N.V. Coleman (2012) Bacterial communities on food court tables and cleaning equipment in a shopping mall. Epidem. & Infect. 141:1647-1651. Impact factor 2.52. <a href="https://www.ncbi.nlm.nih.gov/pubmed/22995219" </a>
  1. Chow, B., Baume, A., Lok , P., Cao, J., Coleman, N., Ruys, A. and P. Boughton (2012) Development of 3D antibiotic-eluting bioresorbable scaffold with attenuating envelopes. Journal of Biomimetics, Biomaterials & Tissue Engineering 15:55-62.
  1. Crighton, T., R. Hoile, and N.V. Coleman (2012) Comparison of quantitative PCR and culture-based methods for evaluating dispersal of Bacillus thuringiensis endospores at a bioterrorism hoax crime scene. Forensic Science International. 219:88-95. Impact factor 1.95 <a href="https://www.ncbi.nlm.nih.gov/pubmed/22227150" </a>
  1. Gestal, A.M., Liew, E.F., and N.V. Coleman (2011) Natural transformation of Pseudomonas stutzeri with synthetic gene cassettes: new tools for integron research and biotechnology. Microbiology. 157:3349-3360. Impact factor 2.27 <a href="https://www.ncbi.nlm.nih.gov/pubmed/21948046" </a>
  1. Ly, M.A., Liew, E.F, Le, N., and N.V. Coleman (2011). Construction and evaluation of pMycoFos, a fosmid shuttle vector for Mycobacterium spp. with inducible gene expression and copy number control. J. Microbiol. Methods 86: 320–326. Impact factor 1.86 <a href="https://www.ncbi.nlm.nih.gov/pubmed/21689690" </a>
  1. Coleman, N. V…27 others…and T.E. Mattes (2011). Genome sequence of the ethene- and vinyl chloride-oxidizing actinomycete Nocardioides sp. strain JS614. Journal of Bacteriology. 193:3399-3400. Impact factor 3.12. <a href="https://www.ncbi.nlm.nih.gov/pubmed/21551312" </a>
  1. Coleman, N.V., Yau, S., Wilson, N.L., Nolan, L.M., Migocki, M.D., Ly, M., Crossett, B. and A.J. Holmes (2011). Untangling the multiple monooxygenases of Mycobacterium chubuense strain NBB4, a versatile hydrocarbon degrader. Environmental Microbiology Reports. 3:297-307. Impact factor 3.50. <a href="https://www.ncbi.nlm.nih.gov/pubmed/23761275" </a>
  1. Le, N. and Coleman, N.V. (2011) Biodegradation of vinyl chloride, cis-dichloroethene and 1,2-dichloroethane in the alkene/alkane-oxidising Mycobacterium strain NBB4. Biodegradation 22: 1095-1108. Impact Factor 2.06 <a href="https://www.ncbi.nlm.nih.gov/pubmed/21365473" </a>
  1. Jin, Y.O., Cheung, S., Coleman, N.V., Mattes, T.E.(2010) Association of missense mutations in epoxyalkane coenzyme M transferase with adaptation of Mycobacterium sp. strain JS623 to growth on vinyl chloride. Applied and Environmental Microbiology. 76:3413-3419. Impact factor 3.67. <a href="https://www.ncbi.nlm.nih.gov/pubmed/20363787" </a>
  1. Mattes, T.E., Alexander, A.K, and N.V. Coleman (2010) Aerobic biodegradation of the chloroethenes: pathways, enzymes, ecology and evolution. FEMS Microbiology Reviews 34: 445-475 Impact Factor 7.96 <a href="https://www.ncbi.nlm.nih.gov/pubmed/20146755" </a>
  1. Baume, A.S., Coleman, N.V., and P.C. Boughton (2009) Methods for achieving soft tissue scaffold sterility. Journal of Biomimetics, Biomaterials & Tissue Engineering 4:59-69
  1. Mattes, T.E., Alexander, A.K., Richardson, P.M., Munk, A.C, Han, C.S., Stothard, P, and N.V. Coleman (2008) The genome of Polaromonas sp. strain JS666: insights into the evolution of a hydrocarbon- and xenobiotic-degrading bacterium, and features of relevance to biotechnology. Applied and Environmental Microbiology. 74:6405-6416. Impact factor 3.67. <a href="https://www.ncbi.nlm.nih.gov/pubmed/18723656" </a>
  1. Holmes A.J. & N.V. Coleman (2008) Evolutionary ecology and multidisciplinary approaches to prospecting for monooxygenases as biocatalysts. Antonie Van Leeuwenhoek. 94:75-84. Impact factor 3.67. <a href="https://www.ncbi.nlm.nih.gov/pubmed/18283556"</a>
  1. Mattes, T.M, Coleman, N.V, Chuang, A.S., Rogers, A.J., Spain, J.C., & Gossett, J.M. (2007) Mechanism controlling the extended lag period associated with vinyl chloride starvation in Nocardioides sp. strain JS614. Archives of Microbiology. 187:217-226. Impact factor 1.98 <a href="https://www.ncbi.nlm.nih.gov/pubmed/17308936" </a>
  1. Coleman N.V., Bui N.B., Holmes A.J. (2006) Soluble di-iron monooxygenase gene diversity in soils, sediments and ethene enrichments. Environmental Microbiology 8: 1228-1239. Impact Factor 5.93 <a href="https://www.ncbi.nlm.nih.gov/pubmed/16817931" t</a>
  1. Priestley, J.T., Coleman, N.V., and Duxbury, T. (2006) Growth rate and nutrient limitation affect the transport of Rhodococcus sp. strain DN22 through sand. Biodegradation 17:571-576. Impact Factor 2.21 <a href="https://www.ncbi.nlm.nih.gov/pubmed/16477351"</a>
  1. Coleman, N. V. and A. J. Holmes (2005) The native Pseudomonas stutzeri strain Q chromosomal integron can capture and express cassette-associated genes. Microbiology 151: 1853-1864. Impact factor 2.27 <a href="https://www.ncbi.nlm.nih.gov/pubmed/15941993" </a>
  1. Mattes, T. E., Coleman, N. V., Spain, J. C. & Gossett, J. M. (2005). Physiological and molecular genetic analyses of vinyl chloride and ethene biodegradation in Nocardioides sp. strain JS614. Archives of Microbiology 183: 95-106. Impact factor 1.76 <a href="https://www.ncbi.nlm.nih.gov/pubmed/15599705" </a>
  1. Coleman, N., Tetu, S., Wilson, N. & Holmes, A. (2004). An unusual integron in Treponema denticola. Comment in Microbiology 150: 3524-3526. Impact factor 2.27 <a href="https://www.ncbi.nlm.nih.gov/pubmed/15528643" </a>
  1. Coleman, N. V., and J. C. Spain (2003) Distribution of the coenzyme M pathway of epoxide metabolism among ethene- and vinyl chloride-degrading Mycobacterium strains. Applied and Environmental Microbiology 69:6041-6046. Impact Factor 3.95 <a href="https://www.ncbi.nlm.nih.gov/pubmed/14532060" </a>
  1. Coleman, N. V., and J. C. Spain (2003) Epoxyalkane:coenzyme M transferase in the ethene and vinyl chloride biodegradation pthways of Mycobacterium strain JS60. Journal of Bacteriology 185:5536-5545. Impact Factor 3.12 <a href="https://www.ncbi.nlm.nih.gov/pubmed/12949106" </a>
  1. Coleman, N.V., Mattes, T.E., Gossett, J.M., and J.C. Spain (2002) Phylogenetic and kinetic diversity of vinyl chloride-assimilating bacteria from contaminated sites. Applied and Environmental Microbiology 68:6162-6171. Impact factor 3.67 <a href="https://www.ncbi.nlm.nih.gov/pubmed/12450841" </a>
  1. Coleman, N.V., Mattes, T.E., Gossett, J.M., and J.C. Spain (2002) Biodegradation of cis-dichloroethene as sole carbon source by a beta-proteobacterium. Applied and Environmental Microbiology 68:2726-2730. Impact factor 3.67 <a href="https://www.ncbi.nlm.nih.gov/pubmed/12039726" </a>
  1. Coleman, N.V., Duxbury, T., and J.C. Spain (2002) Evidence that RDX biodegradation by Rhodococcus strain DN22 is plasmid borne and involves a cytochrome p-450. Journal of Applied Microbiology 93:463-472. Impact Factor 2.16 <a href="https://www.ncbi.nlm.nih.gov/pubmed/12174045" </a>
  1. Coleman, N.V., Nelson, D.R., and T. Duxbury (1998) Aerobic biodegradation of hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) as a nitrogen source by a Rhodococcus sp., strain DN22. Soil Biology and Biochemistry 30:1159-1167. Impact Factor 4.15 <a href="https://www.sciencedirect.com/science/article/pii/S0038071797001727" </a>


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