Etchevers:Notebook/STRA6 in eye development/2009/08/03

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Actually done on August 1st

Made a proper organization of new Dell in Paris lab. Installed Ubuntu from a live DVD just in case; this has more drivers on it, so will reconstitute what is necessary if need to reinstall. Have a dual boot but if choose XP it goes back to the former dual boot with Ubuntu that had been nested inside XP - fix that later.

Also compiled FindPeaks.

<html> <tt> heather@embryo:~/trunk$ ant fpsuite<br /> Buildfile: build.xml<br /> <br /> cleanfp: <br /> initfp:

   [mkdir] Created dir: /home/heather/trunk/jars/fp4

<br /> compile:

   [javac] Compiling <b>138 source files</b> to /home/heather/trunk/classes

<br /> FindPeaks:

   [mkdir] Created dir: /home/heather/trunk/tmp
     [jar] Building jar: /home/heather/trunk/jars/fp4/FindPeaks.jar
  [delete] Deleting directory /home/heather/trunk/tmp

<br /> SeparateReads:

   [mkdir] Created dir: /home/heather/trunk/tmp
     [jar] Building jar: /home/heather/trunk/jars/fp4/SeparateReads.jar
  [delete] Deleting directory /home/heather/trunk/tmp

<br /> SortFiles:

   [mkdir] Created dir: /home/heather/trunk/tmp
     [jar] Building jar: /home/heather/trunk/jars/fp4/SortFiles.jar
  [delete] Deleting directory /home/heather/trunk/tmp

<br /> GenomeViewer:

   [mkdir] Created dir: /home/heather/trunk/tmp
     [jar] Building jar: /home/heather/trunk/jars/fp4/AlignSlice.jar
  [delete] Deleting directory /home/heather/trunk/tmp

<br /> ConvertToBed:

   [mkdir] Created dir: /home/heather/trunk/tmp
     [jar] Building jar: /home/heather/trunk/jars/fp4/ConvertToBed.jar
  [delete] Deleting directory /home/heather/trunk/tmp

<br /> MaqPetToBed:

   [mkdir] Created dir: /home/heather/trunk/tmp
     [jar] Building jar: /home/heather/trunk/jars/fp4/MaqPetToBed.jar
  [delete] Deleting directory /home/heather/trunk/tmp

<br /> BowtieToBedFormat:

   [mkdir] Created dir: /home/heather/trunk/tmp
     [jar] Building jar: /home/heather/trunk/jars/fp4/BowtieToBedFormat.jar
  [delete] Deleting directory /home/heather/trunk/tmp

<br /> buildfp:<br /> <br /> fptestdata:

    [copy] Copying 1 file to /home/heather/trunk/jars/fp4

<br /> changelog:

    [copy] Copying 1 file to /home/heather/trunk/jars

<br /> fpsuite: <br /> BUILD SUCCESSFUL<br /> Total time: 5 seconds<br /> heather@embryo:~/trunk$ <br />

</tt> </html>

  • Heather 13:07, 1 August 2009 (EDT):