Difference between revisions of "Zrusso Biol 368 week 12"

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===Master Spreadsheet===
===Master Spreadsheet===
*So far master spreadsheet can be found [[Media:MasterSpreadsheet.xls | here]].
*[[Media:Alex_Robert_Zeb_MasterSpreadSheet_20111130_CA.xls|Master Spread Sheet]]
*[[Media:Alex_Robert_Zeb_MasterSpreadSheet_20111130_CA.xls|Master Spread Sheet]]

Revision as of 10:09, 30 November 2011

Master Spreadsheet

Uploaded Data

Experiment E-BUG Data

Array Data

Master Spread Sheet

Master Spread Sheet

Week 12 Assignment

  1. What samples did they collect and use for the microarray experiment?
    • 3 replicates of control culture and ranalexin were used in the microarray experiment. 6 total arrays were used in analysis.
  2. How many microarray chips did they hybridize in the experiment?
    • 2 microarray chips were used.
  3. Which samples were paired to hybridize on the chip?
    • Ranalexin (A1) and MRSA-252(A2). MRSA-252(A1) and Ranalexin(A2).
  4. Which was labeled red (Cy5)? Which was labeled green (Cy3)?
    • Ranalexin (A1) and MRSA-252(A2) was labeled red (Cy5). Ranalexin (A2) and MRSA-252(A1) was labeled green (Cy3).
  5. How many replicates did they perform of each type?
    • 2 technical replicates of each type.
  • Arrary data file names
    • Ranalexin (A1) - MBAD_12054.txt
    • Ranalexin (A2) - MBAD_12061.txt
    • MRSA-252 (A1) - MBAD_12055.txt
    • MRSA-252 (A2) - MBAD_12060.txt


  • Spreadsheet can be found here.


Links for Biol 368

Biol 368 Homepage

Zeb Russo's Homepage

Class Journals

Class Journal Week 1

Class Journal Week 2

Class Journal Week 3

Class Journal Week 4

Class Journal Week 5

Class Journal Week 6

Class Journal Week 7

Class Journal Week 8

Class Journal Week 9

Class Journal Week 10

Class Journal Week 11

Class Journal Week 12

Class Journal Week 14

Weekly Journals

Week 2 Journal Entry

Week 3 Journal Entry

Week 4 Journal Entry

Week 5 Journal Entry

Week 6 Journal Entry

Week 7 Journal Entry

Week 8 Journal Entry

Week 9 Journal Entry

Week 10 Journal Entry

Week 11 Journal Entry

Week 12 Journal Entry

Week 14 Journal Entry

Assignment Pages

BIOL368/F11:Week 7

BIOL368/F11:Week 8

BIOL368/F11:Week 9

BIOL368/F11:Week 10

BIOL368/F11:Week 11

BIOL368/F11:Week 12

BIOL368/F11:Week 14