Difference between revisions of "Xenopus Community"

From OpenWetWare
Jump to: navigation, search
(Next Meeting)
(Other)
 
(6 intermediate revisions by 4 users not shown)
Line 1: Line 1:
 
[[Image:Hoatlin_frogs.jpg]]
 
[[Image:Hoatlin_frogs.jpg]]
 
==XenCommunity==
 
==XenCommunity==
Under Construction. Edits and suggestions welcome. See [[Synthetic_Biology| Synthetic Biology Community Pages]] for ideas.
+
Under Construction. Edits and suggestions welcome.
 +
* See [[Synthetic_Biology| Synthetic Biology Community Pages]] for ideas.
 +
*[[Help:Contents | Edit help for this section or to make your own lab wiki]]
 +
*Editing is easy with [[Simple_wiki_editing_examples|wiki edit instructions]].
 
*It was a wonderful meeting in Japan, especially the meeting summary given by Jerry.
 
*It was a wonderful meeting in Japan, especially the meeting summary given by Jerry.
 +
==Discussion about having XenWiki on OWW or hosted at [[http://www.xenbase.org/ XenBase]]==
 +
*XenBase could set up and host a wiki for the Xen Community on its new server, or the XenWiki could be here on OWW. I justed added a few thoughts.
 +
 +
'''Advantages to hosting XenWiki on OWW'''
 +
*[[OpenWetWare:Why join?|general reasons to join OWW]]
 +
# Broader involvement with the non-Xenopus scientific community
 +
#Xen Labs will learn about other work going on in OWW labs, esp. Synthetic Biology
 +
#OWW has a lab-tweaked mediawiki
 +
#very interactive scientists with many interests are managing the OWW site
 +
#learning curve for wikitricks (editing, etc)  is very good because of all the help and organization on OWW. This will help new XenLabs get wikified.
 +
#don't have to cope with administrative and technical overhead of setting up/maintaining the software and hardware to run the wiki
 +
#backed up every day -> moving to server with redundant hardware, diesel power backup, multiple server uplinks to internet, 1 hr hardware replacement guarantee, 24hr monitoring... et cetera
 +
#it does not hurt to try, and then move your wiki later. As long as you are using mediawiki (by far the largest wiki distribution), you can always move pages later.  It really is just copying and pasting code.  In fact, we could probably export the whole lot for you. 
 +
 +
'''Advantages to hosting XenWiki through the [[http://www.xenbase.org/ XenBase]] server'''
 +
#direct links possible between Xenwiki and XenBase areas
 +
#*this is possible (and probably easier) on OWW as we have experience with other databases (BioBricks), and could probably easily modify it to contain your information. 
 +
#control
 +
#private spaces -> one could implement a scheme (not technically possible yet, but could be programmed in) where individual pages have different rights.  Essentially, giving users the ability to place read/write controls on data.
  
 
==What should be on this wiki vs what is already on JGI and XenBase==
 
==What should be on this wiki vs what is already on JGI and XenBase==
Line 37: Line 59:
  
 
==Genomic resources==
 
==Genomic resources==
** metazome (does someone have the link?)
 
 
*[http://xenopus.nibb.ac.jp/ XDB at NIBB - Naoto Ueno's X. laevis EST database]
 
*[http://xenopus.nibb.ac.jp/ XDB at NIBB - Naoto Ueno's X. laevis EST database]
 
*[http://xgc.nci.nih.gov/  Xenopus gene collection]
 
*[http://xgc.nci.nih.gov/  Xenopus gene collection]
Line 47: Line 68:
 
==Other==
 
==Other==
 
*[http://www.frogstore.com/home.php The Frog Store] Isn't the internet wonderful?
 
*[http://www.frogstore.com/home.php The Frog Store] Isn't the internet wonderful?
 +
<wikionly>
 +
<font size=4>'''Recent changes'''</font>{{Special:Recentchanges/Xenopus Community}}
 +
</wikionly>

Latest revision as of 18:31, 17 June 2008

Hoatlin frogs.jpg

XenCommunity

Under Construction. Edits and suggestions welcome.

Discussion about having XenWiki on OWW or hosted at [XenBase]

  • XenBase could set up and host a wiki for the Xen Community on its new server, or the XenWiki could be here on OWW. I justed added a few thoughts.

Advantages to hosting XenWiki on OWW

  1. Broader involvement with the non-Xenopus scientific community
  2. Xen Labs will learn about other work going on in OWW labs, esp. Synthetic Biology
  3. OWW has a lab-tweaked mediawiki
  4. very interactive scientists with many interests are managing the OWW site
  5. learning curve for wikitricks (editing, etc) is very good because of all the help and organization on OWW. This will help new XenLabs get wikified.
  6. don't have to cope with administrative and technical overhead of setting up/maintaining the software and hardware to run the wiki
  7. backed up every day -> moving to server with redundant hardware, diesel power backup, multiple server uplinks to internet, 1 hr hardware replacement guarantee, 24hr monitoring... et cetera
  8. it does not hurt to try, and then move your wiki later. As long as you are using mediawiki (by far the largest wiki distribution), you can always move pages later. It really is just copying and pasting code. In fact, we could probably export the whole lot for you.

Advantages to hosting XenWiki through the [XenBase] server

  1. direct links possible between Xenwiki and XenBase areas
    • this is possible (and probably easier) on OWW as we have experience with other databases (BioBricks), and could probably easily modify it to contain your information.
  2. control
  3. private spaces -> one could implement a scheme (not technically possible yet, but could be programmed in) where individual pages have different rights. Essentially, giving users the ability to place read/write controls on data.

What should be on this wiki vs what is already on JGI and XenBase

Discuss and decide what we need so we can ask NIH, get involved with NIH "report" recommendations

  • notes from 11th Xen Meeting: Instructions for submitting a proposal NHGRC: see 'white paper' instructions on web site (need the link)
  • program announcement due Jan 18 2007, document on web site but applications that do the best produce a resource for the community and also do good science, US labs and non-US labs are considered.

Next Meeting

  • will be in Germany, details TBA
  • contact committee for ideas for next meeting


Collected from Bruce Blumberg's excellent Xine

Xine in html format, back issues

Links to useful sources of information for Xenopus (in no particular order) general interest and utility

Genomic resources

Other

<wikionly>

Recent changes

20 November 2017

     17:02 

In Situ Hybridization on Cryosectioned Tissue‎‎ (17 changes | history) . . (+2,379). . [Anthony S. Castanza‎ (17×)]

 m   

17:02

(cur | prev) . . (0). . Anthony S. Castanza (talk | contribs) (Solutions)

     

17:01

(cur | prev) . . (+93). . Anthony S. Castanza (talk | contribs) (Solutions)

     

16:59

(cur | prev) . . (0). . Anthony S. Castanza (talk | contribs) (Solutions)

     

16:59

(cur | prev) . . (+253). . Anthony S. Castanza (talk | contribs)

     

15:57

(cur | prev) . . (+14). . Anthony S. Castanza (talk | contribs) (Solutions)

     

15:56

(cur | prev) . . (0). . Anthony S. Castanza (talk | contribs) (Solutions)

     

15:52

(cur | prev) . . (+17). . Anthony S. Castanza (talk | contribs)

     

15:48

(cur | prev) . . (+24). . Anthony S. Castanza (talk | contribs) (Equipment)

     

15:47

(cur | prev) . . (+243). . Anthony S. Castanza (talk | contribs) (Reagents)

     

15:45

(cur | prev) . . (+77). . Anthony S. Castanza (talk | contribs) (Reagents)

     

15:44

(cur | prev) . . (+77). . Anthony S. Castanza (talk | contribs) (Reagents)

     

15:43

(cur | prev) . . (+1,164). . Anthony S. Castanza (talk | contribs) (Reagents)

     

15:36

(cur | prev) . . (+134). . Anthony S. Castanza (talk | contribs) (Reagents)

     

15:25

(cur | prev) . . (-5). . Anthony S. Castanza (talk | contribs) (References)

     

15:25

(cur | prev) . . (+244). . Anthony S. Castanza (talk | contribs) (References)

     

15:23

(cur | prev) . . (+47). . Anthony S. Castanza (talk | contribs) (References)

     

15:16

(cur | prev) . . (-3). . Anthony S. Castanza (talk | contribs) (Abstract)

     16:29 

User:Sanuja Mohanaraj/Notebook/Experimental Biochemistry 1 Fall 2017/2017/09/12‎‎ (2 changes | history) . . (+4). . [Sanuja Mohanaraj‎ (2×)]

     

16:29

(cur | prev) . . (+4). . Sanuja Mohanaraj (talk | contribs) (Buffer Solutions Preparation)

     

16:29

(cur | prev) . . (0). . Sanuja Mohanaraj (talk | contribs) (Buffer Solutions Preparation)

     16:16 

User:Sanuja Mohanaraj/Notebook/Experimental Biochemistry 1 Fall 2017/2017/09/05‎‎ (9 changes | history) . . (+1,344). . [Sanuja Mohanaraj‎ (9×)]

     

16:16

(cur | prev) . . (+568). . Sanuja Mohanaraj (talk | contribs) (Results)

     

15:46

(cur | prev) . . (+6). . Sanuja Mohanaraj (talk | contribs) (Titrant Standardization)

     

15:45

(cur | prev) . . (+3). . Sanuja Mohanaraj (talk | contribs) (NaOH Stock Solution Preparation (Titration))

     

15:44

(cur | prev) . . (+36). . Sanuja Mohanaraj (talk | contribs) (Results)

     

15:43

(cur | prev) . . (0). . Sanuja Mohanaraj (talk | contribs) (Results)

     

15:39

(cur | prev) . . (+19). . Sanuja Mohanaraj (talk | contribs) (Result)

     

15:37

(cur | prev) . . (+707). . Sanuja Mohanaraj (talk | contribs) (Observation)

     

15:27

(cur | prev) . . (+2). . Sanuja Mohanaraj (talk | contribs) (Au Nanoparticles Solutions Preparation)

     

15:26

(cur | prev) . . (+3). . Sanuja Mohanaraj (talk | contribs) (NaOH Stock Solution Preparation)

N    16:02 

User:Marjan Dolatmoradi/Notebook/Chem671/2017/11/07‎‎ (2 changes | history) . . (+1,000). . [Marjan Dolatmoradi‎ (2×)]

     

16:02

(cur | prev) . . (+50). . Marjan Dolatmoradi (talk | contribs) (Entry title)

N    

15:48

(cur | prev) . . (+950). . Marjan Dolatmoradi (talk | contribs) (Autocreate 2017/11/07 Entry for User:Marjan_Dolatmoradi/Notebook/Chem671)

     16:01 

(Upload log). .

[Marjan Dolatmoradi‎ (4×); Sanuja Mohanaraj‎ (5×)]

     

16:01

. . Marjan Dolatmoradi (talk | contribs) uploaded File:Photo 2017-11-20 18-57-02.jpg

     

16:00

. . Sanuja Mohanaraj (talk | contribs) uploaded a new version of File:Picture3.jpg

     

16:00

. . Marjan Dolatmoradi (talk | contribs) uploaded File:Photo 2017-11-20 18-57-02 (2).jpg

     

15:55

. . Sanuja Mohanaraj (talk | contribs) uploaded a new version of File:Picture2.jpg

     

15:52

. . Sanuja Mohanaraj (talk | contribs) uploaded a new version of File:Picture1.jpg

     

15:47

. . Marjan Dolatmoradi (talk | contribs) uploaded a new version of File:Table-AuNPsD2O.png

     

15:45

. . Marjan Dolatmoradi (talk | contribs) uploaded File:Table-AuNPsD2O.png

     

15:35

. . Sanuja Mohanaraj (talk | contribs) uploaded File:Screen Shot 2017-11-20 at 6.33.46 PM.png

     

14:48

. . Sanuja Mohanaraj (talk | contribs) uploaded a new version of File:Picture1.jpg

     15:50 

User:Anthony S. Castanza‎‎ (3 changes | history) . . (-61). . [Anthony S. Castanza‎ (3×)]

     

15:50

(cur | prev) . . (-1). . Anthony S. Castanza (talk | contribs)

     

15:49

(cur | prev) . . (-75). . Anthony S. Castanza (talk | contribs)

     

15:49

(cur | prev) . . (+15). . Anthony S. Castanza (talk | contribs) (Contact Info)

N    15:48  User:Marjan Dolatmoradi/Notebook/Chem671/2017/11‎ (diff | hist) . . (+203). . Marjan Dolatmoradi (talk | contribs) (Autocreate Month 2017/11 Entry for User:Marjan_Dolatmoradi/Notebook/Chem671)

N    15:48 

User:Marjan Dolatmoradi/Notebook/Chem671/2017/10/31‎‎ (3 changes | history) . . (+966). . [Marjan Dolatmoradi‎ (3×)]

     

15:48

(cur | prev) . . (+2). . Marjan Dolatmoradi (talk | contribs) (Synthesizing AuNPs)

     

15:46

(cur | prev) . . (+14). . Marjan Dolatmoradi (talk | contribs) (Entry title)

N    

14:40

(cur | prev) . . (+950). . Marjan Dolatmoradi (talk | contribs) (Autocreate 2017/10/31 Entry for User:Marjan_Dolatmoradi/Notebook/Chem671)

     15:25  User:Sanuja Mohanaraj/Notebook/Experimental Biochemistry 1 Fall 2017/2017/08/30‎ (diff | hist) . . (+136). . Sanuja Mohanaraj (talk | contribs) (Observation)

     14:56 

User:Sanuja Mohanaraj/Notebook/Experimental Biochemistry 1 Fall 2017/2017/08/29‎‎ (3 changes | history) . . (+69). . [Sanuja Mohanaraj‎ (3×)]

     

14:56

(cur | prev) . . (+50). . Sanuja Mohanaraj (talk | contribs) (Observation)

     

14:43

(cur | prev) . . (+8). . Sanuja Mohanaraj (talk | contribs) (Measurement Practice)

     

14:41

(cur | prev) . . (+11). . Sanuja Mohanaraj (talk | contribs) (Experimental Procedure)

</wikionly>