Difference between revisions of "Xenopus Community"

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[[Image:Hoatlin_frogs.jpg]]
 
[[Image:Hoatlin_frogs.jpg]]
 
==XenCommunity==
 
==XenCommunity==
Under Construction
+
Under Construction. Edits and suggestions welcome.
 +
* See [[Synthetic_Biology| Synthetic Biology Community Pages]] for ideas.
 +
*[[Help:Contents | Edit help for this section or to make your own lab wiki]]
 +
*Editing is easy with [[Simple_wiki_editing_examples|wiki edit instructions]].
 
*It was a wonderful meeting in Japan, especially the meeting summary given by Jerry.
 
*It was a wonderful meeting in Japan, especially the meeting summary given by Jerry.
 +
==Discussion about having XenWiki on OWW or hosted at [[http://www.xenbase.org/ XenBase]]==
 +
*XenBase could set up and host a wiki for the Xen Community on its new server, or the XenWiki could be here on OWW. I justed added a few thoughts.
 +
 +
'''Advantages to hosting XenWiki on OWW'''
 +
*[[OpenWetWare:Why join?|general reasons to join OWW]]
 +
# Broader involvement with the non-Xenopus scientific community
 +
#Xen Labs will learn about other work going on in OWW labs, esp. Synthetic Biology
 +
#OWW has a lab-tweaked mediawiki
 +
#very interactive scientists with many interests are managing the OWW site
 +
#learning curve for wikitricks (editing, etc)  is very good because of all the help and organization on OWW. This will help new XenLabs get wikified.
 +
#don't have to cope with administrative and technical overhead of setting up/maintaining the software and hardware to run the wiki
 +
#backed up every day -> moving to server with redundant hardware, diesel power backup, multiple server uplinks to internet, 1 hr hardware replacement guarantee, 24hr monitoring... et cetera
 +
#it does not hurt to try, and then move your wiki later. As long as you are using mediawiki (by far the largest wiki distribution), you can always move pages later.  It really is just copying and pasting code.  In fact, we could probably export the whole lot for you. 
 +
 +
'''Advantages to hosting XenWiki through the [[http://www.xenbase.org/ XenBase]] server'''
 +
#direct links possible between Xenwiki and XenBase areas
 +
#*this is possible (and probably easier) on OWW as we have experience with other databases (BioBricks), and could probably easily modify it to contain your information. 
 +
#control
 +
#private spaces -> one could implement a scheme (not technically possible yet, but could be programmed in) where individual pages have different rights.  Essentially, giving users the ability to place read/write controls on data.
  
*Considerations
 
 
==What should be on this wiki vs what is already on JGI and XenBase==
 
==What should be on this wiki vs what is already on JGI and XenBase==
  
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Collected from [http://blumberg-serv.bio.uci.edu/ Bruce Blumberg's] excellent Xine.
+
==Collected from [http://blumberg-serv.bio.uci.edu/ Bruce Blumberg's] excellent Xine==
  
 
*[http://indigene.ibaic.u-psud.fr/article.php3?id_article=53 Xenopus Tutorial from Amy Sater]
 
*[http://indigene.ibaic.u-psud.fr/article.php3?id_article=53 Xenopus Tutorial from Amy Sater]
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*[http://www.xenbase.org/xine/xine.html]
 
*[http://www.xenbase.org/xine/xine.html]
  
;Links to useful sources of information for Xenopus (in no particular order) general interest and utility
+
==Links to useful sources of information for Xenopus (in no particular order) general interest and utility==
 
*[http://www.nih.gov/science/models/xenopus/ Trans NIH Xenopus initiative]
 
*[http://www.nih.gov/science/models/xenopus/ Trans NIH Xenopus initiative]
 
*[http://tropicalis.berkeley.edu/home/ Harland lab X. tropicalis site]
 
*[http://tropicalis.berkeley.edu/home/ Harland lab X. tropicalis site]
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*[http://www.metazome.net/ metazome]
 
*[http://www.metazome.net/ metazome]
  
;Genomic resources
+
==Genomic resources==
** metazome
 
 
*[http://xenopus.nibb.ac.jp/ XDB at NIBB - Naoto Ueno's X. laevis EST database]
 
*[http://xenopus.nibb.ac.jp/ XDB at NIBB - Naoto Ueno's X. laevis EST database]
 
*[http://xgc.nci.nih.gov/  Xenopus gene collection]
 
*[http://xgc.nci.nih.gov/  Xenopus gene collection]
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*[http://www.xenbase.org/ Xenbase]
 
*[http://www.xenbase.org/ Xenbase]
  
;Other
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==Other==
 
*[http://www.frogstore.com/home.php The Frog Store] Isn't the internet wonderful?
 
*[http://www.frogstore.com/home.php The Frog Store] Isn't the internet wonderful?
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<wikionly>
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<font size=4>'''Recent changes'''</font>{{Special:Recentchanges/Xenopus Community}}
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</wikionly>

Latest revision as of 18:31, 17 June 2008

Hoatlin frogs.jpg

XenCommunity

Under Construction. Edits and suggestions welcome.

Discussion about having XenWiki on OWW or hosted at [XenBase]

  • XenBase could set up and host a wiki for the Xen Community on its new server, or the XenWiki could be here on OWW. I justed added a few thoughts.

Advantages to hosting XenWiki on OWW

  1. Broader involvement with the non-Xenopus scientific community
  2. Xen Labs will learn about other work going on in OWW labs, esp. Synthetic Biology
  3. OWW has a lab-tweaked mediawiki
  4. very interactive scientists with many interests are managing the OWW site
  5. learning curve for wikitricks (editing, etc) is very good because of all the help and organization on OWW. This will help new XenLabs get wikified.
  6. don't have to cope with administrative and technical overhead of setting up/maintaining the software and hardware to run the wiki
  7. backed up every day -> moving to server with redundant hardware, diesel power backup, multiple server uplinks to internet, 1 hr hardware replacement guarantee, 24hr monitoring... et cetera
  8. it does not hurt to try, and then move your wiki later. As long as you are using mediawiki (by far the largest wiki distribution), you can always move pages later. It really is just copying and pasting code. In fact, we could probably export the whole lot for you.

Advantages to hosting XenWiki through the [XenBase] server

  1. direct links possible between Xenwiki and XenBase areas
    • this is possible (and probably easier) on OWW as we have experience with other databases (BioBricks), and could probably easily modify it to contain your information.
  2. control
  3. private spaces -> one could implement a scheme (not technically possible yet, but could be programmed in) where individual pages have different rights. Essentially, giving users the ability to place read/write controls on data.

What should be on this wiki vs what is already on JGI and XenBase

Discuss and decide what we need so we can ask NIH, get involved with NIH "report" recommendations

  • notes from 11th Xen Meeting: Instructions for submitting a proposal NHGRC: see 'white paper' instructions on web site (need the link)
  • program announcement due Jan 18 2007, document on web site but applications that do the best produce a resource for the community and also do good science, US labs and non-US labs are considered.

Next Meeting

  • will be in Germany, details TBA
  • contact committee for ideas for next meeting


Collected from Bruce Blumberg's excellent Xine

Xine in html format, back issues

Links to useful sources of information for Xenopus (in no particular order) general interest and utility

Genomic resources

Other

<wikionly>

Recent changes

21 November 2017

N    18:37  User:Anh Do/Notebook/CHEM 471/2017/10/25‎ (diff | hist) . . (+950). . Anh Do (talk | contribs) (Autocreate 2017/10/25 Entry for User:Anh_Do/Notebook/CHEM_471)

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BME100 f2017:Group15 W0800 L6‎‎ (6 changes | history) . . (+7,121). . [John Navas‎ (6×)]

     

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(cur | prev) . . (+33). . John Navas (talk | contribs) (Bayesian Statistics)

     

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User:Anh Do/Notebook/CHEM 471/2017/10/24‎‎ (2 changes | history) . . (+1,400). . [Anh Do‎ (2×)]

     

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(cur | prev) . . (+950). . Anh Do (talk | contribs) (Autocreate 2017/10/24 Entry for User:Anh_Do/Notebook/CHEM_471)

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BME100 f2017:Group14 W0800 L6‎‎ (6 changes | history) . . (+3,509). . [Shae M. Diaz‎; Sean M. Smits‎ (2×); Carlos Mendez-Arias‎ (3×)]

     

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BME100 f2017:Group4 W1030 L6‎‎ (2 changes | history) . . (+894). . [Ryan Dougherty‎ (2×)]

     

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(cur | prev) . . (+41). . Jasmine C. Barboa (talk | contribs) (Intro to Computer-Aided Design)

     

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(cur | prev) . . (+41). . Jasmine C. Barboa (talk | contribs) (Intro to Computer-Aided Design)

     

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(cur | prev) . . (+333). . Alec McCall (talk | contribs) (Feature 2: Hardware - PCR Machine & Fluorimeter)

     

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(cur | prev) . . (+35). . Jasmine C. Barboa (talk | contribs) (Intro to Computer-Aided Design)

     

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User:Anh Do/Notebook/CHEM 471/2017/10/18‎‎ (2 changes | history) . . (+1,152). . [Anh Do‎ (2×)]

     

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(cur | prev) . . (+950). . Anh Do (talk | contribs) (Autocreate 2017/10/18 Entry for User:Anh_Do/Notebook/CHEM_471)

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(Upload log). .

[Jasmine C. Barboa‎ (3×); Carlos Mendez-Arias‎ (6×)]

     

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. . Jasmine C. Barboa (talk | contribs) uploaded File:Solidworksboxthingy3.jpeg

     

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. . Carlos Mendez-Arias (talk | contribs) uploaded a new version of File:BLUTOOFv2.PNG

     

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BME100 f2017:Group9 W1030 L6‎‎ (4 changes | history) . . (+3,411). . [Samantha Balconi‎; Cassity R. Jones‎ (3×)]

     

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BME100 f2017:Group1 W1030 L6‎‎ (3 changes | history) . . (+813). . [Abby E. Krell‎ (3×)]

     

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(cur | prev) . . (+799). . Abby E. Krell (talk | contribs) (Feature 2: Hardware - PCR Machine & Fluorimeter)

     17:55  BME100 f2017:Group7 W1030 L6‎ (diff | hist) . . (-15). . Sarah R. Brady (talk | contribs) (Feature 1: Consumables)

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