Wikiomics:Mutation/SNP detection

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Mutation/SNP detection

  • PolyScan ref New program claimed to be superior to MutationSurveyor/PolyPhred/SNPdetector
  • MutationSurveyor $$$ program. 30 days demo available. MS3 has a limit of MS3 400 traces in a single project. GUI. Used in several diagnostic labs.
  • InSNP windows only, ABI base calls? detects substitution and indel SNPs in sequencing traces

see (unchecked yet): PolyPhred tutorial

SNP

  • novoSNP ref Windows/Linux 2.0.3. GUI & command line on Linux.