Difference between revisions of "Wikiomics:Mutation/SNP detection"

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* [http://bfgl.anri.barc.usda.gov/ML/snp-phage/ SNP-PHAGE]
 
* [http://bfgl.anri.barc.usda.gov/ML/snp-phage/ SNP-PHAGE]
 
* [http://snp.agrsci.dk/maviant MAVIANT] tool for SNP evaluation and annotation.
 
* [http://snp.agrsci.dk/maviant MAVIANT] tool for SNP evaluation and annotation.
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[[Category:Protocol]]
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[[Category:In silico]]
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[[Category:Sequence analysis]]

Latest revision as of 12:25, 29 July 2008

Mutation/SNP detection

  • PolyScan ref New program claimed to be superior to MutationSurveyor/PolyPhred/SNPdetector
  • MutationSurveyor $$$ program. 30 days demo available. MS3 has a limit of MS3 400 traces in a single project. GUI. Used in several diagnostic labs.
  • InSNP windows only, ABI base calls? detects substitution and indel SNPs in sequencing traces

see (unchecked yet): PolyPhred tutorial

SNP

  • novoSNP ref Windows/Linux 2.0.3. GUI & command line on Linux.