Van Oudenaarden Lab:C18B12.3: Difference between revisions
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>C18B12.3 (dsc-1 spliced coding region) | |||
atgaaccctcataccaacctcaacaacgtattcgactttcctgatctcccgatgctacttccaaaatcagaagctttgtc | |||
tgtaaccaccgatttttctgtgccaccagtgcaacagggagctcaacaattccacccgccgcgcaatctgggaccacagc | |||
ttgctcgtcgctggagctgcggcgattcacagcatgccgacgaaccgcccgcctcctactaccataacctcggcgtcgcc | |||
cttcataaccactttcaaatgtcgaatcagcattatttatcggattttgattgtccaacaacggtttcaccgatttcatc | |||
tgcacatgaaactgggcaattgccacaattgagtccgtatgatcatattggaaatcaggatccgcatatgttctctcccc | |||
atgcttatggaaactctatgattcctgacaattcatattttgaaaatgcgtcacgctccatctctgcaccaaacgttggc | |||
aattcaactctgaacccttctctgatgtcaagcgacaatgctcaaagttgtggaggccgacgaagattcagaaccaactt | |||
caccgaacttcaatccaccttccttgaagattcattcaaagaatcacactacccggatcacaaggccaaaaagtatatgg | |||
ctgactttttgaaaattccagaggatcgtatcacggtatggtttcaaaaccgacgcgcaaaatggagaaggaaggagcac | |||
cgtcaacgggatcgcactcggaatgaatctttcagtggaggatcaaactcgtttgattttgcgtgtttttctgcgcaaca | |||
tccagatgatggtccgaatgcaaagcatccaaattcttttggtattcccaatcaaccgatgtcccttgaccaattcccaa | |||
tgaacactgaacaagattttcctgaatttccaagcctacaggagcatcaataa | |||
ggcatcgatatactatctcaatatcatttatttggatttttt | |||
aagttgaaattttggttgttttttcttcctcttagaacaaatcaaaaagccagtttgtacctgttatacagatcaagaaa | |||
tatgtattttgcaattttctatgttattttttgacttttcatctatatatttttcgtttgtatatgtgattatgtgctta | |||
ttctagattttcatatcactttttaaccgttagttttgtcagataattagataatattaataaataaaaccattc | |||
---- | |||
Name of probe set: dsc-1 | |||
Probes designed on Mon, 01 Mar 10 14:13:32 -0700 | |||
48 probes designed for target of length 1210 | |||
Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC | |||
aggttggtatgagggttcat, dsc-1_1, 1, 1, 45 | |||
caggaaagtcgaatacgttg, dsc-1_2, 2, 24, 45 | |||
tttggaagtagcatcgggag, dsc-1_3, 3, 46, 50 | |||
ggttacagacaaagcttctg, dsc-1_4, 4, 68, 45 | |||
actggtggcacagaaaaatc, dsc-1_5, 5, 91, 45 | |||
gaattgttgagctccctgtt, dsc-1_6, 6, 113, 45 | |||
aagctgtggtcccagattgc, dsc-1_7, 7, 143, 55 | |||
ttcgtcggcatgctgtgaat, dsc-1_8, 8, 185, 50 | |||
aggttatggtagtaggaggc, dsc-1_9, 9, 211, 50 | |||
agtggttatgaagggcgacg, dsc-1_10, 10, 234, 55 | |||
taatgctgattcgacatttg, dsc-1_11, 11, 256, 35 | |||
gttggacaatcaaaatccga, dsc-1_12, 12, 280, 40 | |||
agatgaaatcggtgaaaccg, dsc-1_13, 13, 302, 45 | |||
gcaattgcccagtttcatgt, dsc-1_14, 14, 324, 45 | |||
tgatcatacggactcaattg, dsc-1_15, 15, 346, 40 | |||
atgcggatcctgatttccaa, dsc-1_16, 16, 368, 45 | |||
tttccataagcatggggaga, dsc-1_17, 17, 394, 45 | |||
tgaattgtcaggaatcatag, dsc-1_18, 18, 416, 35 | |||
agcgtgacgcattttcaaaa, dsc-1_19, 19, 438, 40 | |||
ccaacgtttggtgcagagat, dsc-1_20, 20, 460, 50 | |||
gagaagggttcagagttgaa, dsc-1_21, 21, 483, 45 | |||
tgagcattgtcgcttgacat, dsc-1_22, 22, 505, 45 | |||
atcttcgtcggcctccacaa, dsc-1_23, 23, 528, 55 | |||
agttcggtgaagttggttct, dsc-1_24, 24, 550, 45 | |||
gaatcttcaaggaaggtgga, dsc-1_25, 25, 574, 45 | |||
cgggtagtgtgattctttga, dsc-1_26, 26, 596, 45 | |||
tatactttttggccttgtga, dsc-1_27, 27, 618, 35 | |||
ggaattttcaaaaagtcagc, dsc-1_28, 28, 640, 35 | |||
ccataccgtgatacgatcct, dsc-1_29, 29, 662, 50 | |||
attttgcgcgtcggttttga, dsc-1_30, 30, 684, 45 | |||
tgacggtgctccttccttct, dsc-1_31, 31, 706, 55 | |||
attcattccgagtgcgatcc, dsc-1_32, 32, 729, 50 | |||
gagtttgatcctccactgaa, dsc-1_33, 33, 751, 45 | |||
gcagaaaaacacgcaaaatc, dsc-1_34, 34, 775, 40 | |||
cggaccatcatctggatgtt, dsc-1_35, 35, 797, 50 | |||
aagaatttggatgctttgca, dsc-1_36, 36, 819, 35 | |||
atcggttgattgggaatacc, dsc-1_37, 37, 841, 45 | |||
cattgggaattggtcaaggg, dsc-1_38, 38, 863, 50 | |||
caggaaaatcttgttcagtg, dsc-1_39, 39, 885, 40 | |||
attgatgctcctgtaggctt, dsc-1_40, 40, 912, 45 | |||
tgagatagtatatcgatgcc, dsc-1_41, 41, 934, 40 | |||
gaggaagaaaaaacaaccaa, dsc-1_42, 42, 987, 35 | |||
ctggctttttgatttgttct, dsc-1_43, 43, 1009, 35 | |||
tgatctgtataacaggtaca, dsc-1_44, 44, 1031, 35 | |||
catagaaaattgcaaaatac, dsc-1_45, 45, 1059, 25 | |||
cacatatacaaacgaaaaat, dsc-1_46, 46, 1104, 25 | |||
gaaaatctagaataagcaca, dsc-1_47, 47, 1128, 30 | |||
ctgacaaaactaacggttaa, dsc-1_48, 48, 1158, 35 |
Latest revision as of 14:14, 1 March 2010
Progress:
Probes designed: (03-01-2010 - Alexander van Oudenaarden)
Probes coupled:
Probes purified:
Probes tested:
Dyes available:
>C18B12.3 (dsc-1 spliced coding region)
atgaaccctcataccaacctcaacaacgtattcgactttcctgatctcccgatgctacttccaaaatcagaagctttgtc tgtaaccaccgatttttctgtgccaccagtgcaacagggagctcaacaattccacccgccgcgcaatctgggaccacagc ttgctcgtcgctggagctgcggcgattcacagcatgccgacgaaccgcccgcctcctactaccataacctcggcgtcgcc cttcataaccactttcaaatgtcgaatcagcattatttatcggattttgattgtccaacaacggtttcaccgatttcatc tgcacatgaaactgggcaattgccacaattgagtccgtatgatcatattggaaatcaggatccgcatatgttctctcccc atgcttatggaaactctatgattcctgacaattcatattttgaaaatgcgtcacgctccatctctgcaccaaacgttggc aattcaactctgaacccttctctgatgtcaagcgacaatgctcaaagttgtggaggccgacgaagattcagaaccaactt caccgaacttcaatccaccttccttgaagattcattcaaagaatcacactacccggatcacaaggccaaaaagtatatgg ctgactttttgaaaattccagaggatcgtatcacggtatggtttcaaaaccgacgcgcaaaatggagaaggaaggagcac cgtcaacgggatcgcactcggaatgaatctttcagtggaggatcaaactcgtttgattttgcgtgtttttctgcgcaaca tccagatgatggtccgaatgcaaagcatccaaattcttttggtattcccaatcaaccgatgtcccttgaccaattcccaa tgaacactgaacaagattttcctgaatttccaagcctacaggagcatcaataa
ggcatcgatatactatctcaatatcatttatttggatttttt aagttgaaattttggttgttttttcttcctcttagaacaaatcaaaaagccagtttgtacctgttatacagatcaagaaa tatgtattttgcaattttctatgttattttttgacttttcatctatatatttttcgtttgtatatgtgattatgtgctta ttctagattttcatatcactttttaaccgttagttttgtcagataattagataatattaataaataaaaccattc
Name of probe set: dsc-1
Probes designed on Mon, 01 Mar 10 14:13:32 -0700
48 probes designed for target of length 1210
Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC
aggttggtatgagggttcat, dsc-1_1, 1, 1, 45
caggaaagtcgaatacgttg, dsc-1_2, 2, 24, 45
tttggaagtagcatcgggag, dsc-1_3, 3, 46, 50
ggttacagacaaagcttctg, dsc-1_4, 4, 68, 45
actggtggcacagaaaaatc, dsc-1_5, 5, 91, 45
gaattgttgagctccctgtt, dsc-1_6, 6, 113, 45
aagctgtggtcccagattgc, dsc-1_7, 7, 143, 55
ttcgtcggcatgctgtgaat, dsc-1_8, 8, 185, 50
aggttatggtagtaggaggc, dsc-1_9, 9, 211, 50
agtggttatgaagggcgacg, dsc-1_10, 10, 234, 55
taatgctgattcgacatttg, dsc-1_11, 11, 256, 35
gttggacaatcaaaatccga, dsc-1_12, 12, 280, 40
agatgaaatcggtgaaaccg, dsc-1_13, 13, 302, 45
gcaattgcccagtttcatgt, dsc-1_14, 14, 324, 45
tgatcatacggactcaattg, dsc-1_15, 15, 346, 40
atgcggatcctgatttccaa, dsc-1_16, 16, 368, 45
tttccataagcatggggaga, dsc-1_17, 17, 394, 45
tgaattgtcaggaatcatag, dsc-1_18, 18, 416, 35
agcgtgacgcattttcaaaa, dsc-1_19, 19, 438, 40
ccaacgtttggtgcagagat, dsc-1_20, 20, 460, 50
gagaagggttcagagttgaa, dsc-1_21, 21, 483, 45
tgagcattgtcgcttgacat, dsc-1_22, 22, 505, 45
atcttcgtcggcctccacaa, dsc-1_23, 23, 528, 55
agttcggtgaagttggttct, dsc-1_24, 24, 550, 45
gaatcttcaaggaaggtgga, dsc-1_25, 25, 574, 45
cgggtagtgtgattctttga, dsc-1_26, 26, 596, 45
tatactttttggccttgtga, dsc-1_27, 27, 618, 35
ggaattttcaaaaagtcagc, dsc-1_28, 28, 640, 35
ccataccgtgatacgatcct, dsc-1_29, 29, 662, 50
attttgcgcgtcggttttga, dsc-1_30, 30, 684, 45
tgacggtgctccttccttct, dsc-1_31, 31, 706, 55
attcattccgagtgcgatcc, dsc-1_32, 32, 729, 50
gagtttgatcctccactgaa, dsc-1_33, 33, 751, 45
gcagaaaaacacgcaaaatc, dsc-1_34, 34, 775, 40
cggaccatcatctggatgtt, dsc-1_35, 35, 797, 50
aagaatttggatgctttgca, dsc-1_36, 36, 819, 35
atcggttgattgggaatacc, dsc-1_37, 37, 841, 45
cattgggaattggtcaaggg, dsc-1_38, 38, 863, 50
caggaaaatcttgttcagtg, dsc-1_39, 39, 885, 40
attgatgctcctgtaggctt, dsc-1_40, 40, 912, 45
tgagatagtatatcgatgcc, dsc-1_41, 41, 934, 40
gaggaagaaaaaacaaccaa, dsc-1_42, 42, 987, 35
ctggctttttgatttgttct, dsc-1_43, 43, 1009, 35
tgatctgtataacaggtaca, dsc-1_44, 44, 1031, 35
catagaaaattgcaaaatac, dsc-1_45, 45, 1059, 25
cacatatacaaacgaaaaat, dsc-1_46, 46, 1104, 25
gaaaatctagaataagcaca, dsc-1_47, 47, 1128, 30
ctgacaaaactaacggttaa, dsc-1_48, 48, 1158, 35