Van Oudenaarden Lab:C18A3.8

Progress:

Probes designed: (03-01-2010 - Alexander van Oudenaarden)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:

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>C18A3.8 (hlh-14 spliced coding region)

atgatgctagaatctttaattgttattttcttgaactctcacagctgtaagattttccagatttgtacctcctcccaatc ctttgacctcgaactcttcaactcctccctctataatttggtgccaatacggtttgtgccaatatccaccctcctagtcc cgcccatcagattgtcccgtcccgcctttcctctcaccattagccttattcattcagttcacccacactcactcctagcc accaccgtcttccctctctctttttattttcccgcccaacaaaaaaaggaagcaatggccaagaagaatcaagttgccag aaatgagagagaacgcaagcgagttcatcaggtaaaccatggtttcgacgtgctccgcaaccgtcttcaaccaaagaatc ataccaagaaatggagcaaagcagacacccttcgtgaagctgtcaagtatattcaacaacttcaggttcttctcaatcaa gatccacagcaaccatcagtttcttcttcaactcccgactacacgatgaacaacagcaacaacttcaacaattatgccgt aaaagaagaattctcgatgtatttgcctcaaaactattgcccacaaaatcaaatgtcagtacctcatggagatgtttccc ataacttcaattctccaacatcatcagtttcctcatcttcttactcaccaactcaaatgtgttatcctccagtttcatat tccaattatccacaccattaa

tttggaaaatcgatattttagtattcccttcttatcattcaaagatctggtgcatttacgggt ctccatactgtttttgtttttaatattaattgttagatttttttccaaaaaactcaatagccaataaatcaattcctaca cat

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Name of probe set: hlh-14

Probes designed on Mon, 01 Mar 10 14:34:11 -0700

40 probes designed for target of length 887 (target too short for 48 probes)

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

caattaaagattctagcatc, hlh-14_1, 1, 3, 30

ctgtgagagttcaagaaaat, hlh-14_2, 2, 25, 35

acaaatctggaaaatcttac, hlh-14_3, 3, 47, 30

aggtcaaaggattgggagga, hlh-14_4, 4, 70, 50

gagggaggagttgaagagtt, hlh-14_5, 5, 92, 50

accgtattggcaccaaatta, hlh-14_6, 6, 114, 40

aggagggtggatattggcac, hlh-14_7, 7, 136, 55

ggacaatctgatgggcggga, hlh-14_8, 8, 158, 60

tggtgagaggaaaggcggga, hlh-14_9, 9, 180, 60

tgaactgaatgaataaggct, hlh-14_10, 10, 202, 35

ggtggctaggagtgagtgtg, hlh-14_11, 11, 224, 60

aaaaagagagagggaagacg, hlh-14_12, 12, 246, 45

tttttttgttgggcgggaaa, hlh-14_13, 13, 268, 40

attcttcttggccattgctt, hlh-14_14, 14, 290, 40

ctctctcatttctggcaact, hlh-14_15, 15, 312, 45

acctgatgaactcgcttgcg, hlh-14_16, 16, 334, 55

gagcacgtcgaaaccatggt, hlh-14_17, 17, 356, 55

tctttggttgaagacggttg, hlh-14_18, 18, 378, 45

ttgctccatttcttggtatg, hlh-14_19, 19, 400, 40

agcttcacgaagggtgtctg, hlh-14_20, 20, 422, 55

gaagttgttgaatatacttg, hlh-14_21, 21, 444, 30

ggatcttgattgagaagaac, hlh-14_22, 22, 466, 40

agaagaaactgatggttgct, hlh-14_23, 23, 488, 40

tcatcgtgtagtcgggagtt, hlh-14_24, 24, 510, 50

ttgttgaagttgttgctgtt, hlh-14_25, 25, 532, 35

gaattcttcttttacggcat, hlh-14_26, 26, 554, 35

agttttgaggcaaatacatc, hlh-14_27, 27, 576, 35

gacatttgattttgtgggca, hlh-14_28, 28, 598, 40

ggaaacatctccatgaggta, hlh-14_29, 29, 620, 45

atgttggagaattgaagtta, hlh-14_30, 30, 642, 30

taagaagatgaggaaactga, hlh-14_31, 31, 664, 35

ataacacatttgagttggtg, hlh-14_32, 32, 686, 35

aattggaatatgaaactgga, hlh-14_33, 33, 708, 30

tttccaaattaatggtgtgg, hlh-14_34, 34, 730, 35

aagggaatactaaaatatcg, hlh-14_35, 35, 752, 30

caccagatctttgaatgata, hlh-14_36, 36, 774, 35

acagtatggagacccgtaaa, hlh-14_37, 37, 796, 45

acaattaatattaaaaacaa, hlh-14_38, 38, 818, 10

gagttttttggaaaaaaatc, hlh-14_39, 39, 840, 25

gtaggaattgatttattggc, hlh-14_40, 40, 864, 35