Difference between revisions of "User:Viswanadham Sridhara"

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==Contact Info==
 
==Contact Info==
[[Image:OWWEmblem.png|thumb|right|Viswanadham Sridhara (an artistic interpretation)]]
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[[Image:Viswanadham.png|thumb|right|Viswanadham Sridhara (an artistic interpretation)]]
  
 
*Viswanadham Sridhara
 
*Viswanadham Sridhara
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==Education==
 
==Education==
 
<!--Include info about your educational background-->
 
<!--Include info about your educational background-->
* 2012, Post-doc, Computational Biology, [[http://www.ncbi.nlm.nih.gov/Structure/structure_research.html NCBI]], NIH
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* 2012, Post-doc, Computational Biology, [[http://www.ncbi.nlm.nih.gov/Structure/structure_research.html NCBI Structure Group]], NIH
 
* 2007, PhD, Electrical and Computer Engineering, Old Dominion University
 
* 2007, PhD, Electrical and Computer Engineering, Old Dominion University
 
* 2003, MS,  Electrical and Computer Engineering, Old Dominion University
 
* 2003, MS,  Electrical and Computer Engineering, Old Dominion University
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==Research interests==
 
==Research interests==
 
<!-- Feel free to add brief descriptions to your research interests as well -->
 
<!-- Feel free to add brief descriptions to your research interests as well -->
# OMICS Data Analysis using Metabolic Reconstructions
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# OMICS Data Analysis using Genome-based Metabolic Networks
 
# Mass-Spectrometry based Proteomics/Metabolomics
 
# Mass-Spectrometry based Proteomics/Metabolomics
 
# Molecular Dynamics Simulations
 
# Molecular Dynamics Simulations
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<!-- Replace the PubMed ID's ("pmid=#######") below with the PubMed ID's for your publications.  You can add or remove lines as needed -->
 
<!-- Replace the PubMed ID's ("pmid=#######") below with the PubMed ID's for your publications.  You can add or remove lines as needed -->
 
<biblio>
 
<biblio>
#Paper1 pmid=22321509
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#Paper9 Sridhara V et. al., [[http://biorxiv.org/content/early/2014/01/31/002287.1 Predicting bacterial growth conditions from bacterial physiology]]
#Paper2 pmid=21571812
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#Paper8 pmid=24239610
#Paper3 pmid=17706595
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#Paper7 pmid=22321509
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#Paper6 pmid=21571812
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#Paper5 pmid=17706595
 
#Paper4 pmid=17500934
 
#Paper4 pmid=17500934
#Paper5 pmid=17123870
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#Paper3 pmid=17123870
#Paper6 pmid=16890913
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#Paper2 pmid=16890913
#Paper7 pmid=15903466
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#Paper1 pmid=15903466
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#Papers [[http://scholar.google.com/citations?user=UBvhRHgAAAAJ&hl=en List of all publications]]
 
</biblio>
 
</biblio>
  
 
==Useful links==
 
==Useful links==
*[[OpenWetWare:Welcome|Introductory tutorial]]
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*[[http://www.ncbi.nlm.nih.gov/pubmed/ PUBMED]]
*[[Help|OpenWetWare help pages]]
 

Revision as of 16:04, 4 February 2014

I am a new member of OpenWetWare!

Contact Info

Viswanadham Sridhara (an artistic interpretation)

I work both at [CCBB] and in [Wilke Lab] at The University of Texas at Austin.

Education

  • 2012, Post-doc, Computational Biology, [NCBI Structure Group], NIH
  • 2007, PhD, Electrical and Computer Engineering, Old Dominion University
  • 2003, MS, Electrical and Computer Engineering, Old Dominion University

Research interests

  1. OMICS Data Analysis using Genome-based Metabolic Networks
  2. Mass-Spectrometry based Proteomics/Metabolomics
  3. Molecular Dynamics Simulations

Publications

  1. Sridhara V et. al., [Predicting bacterial growth conditions from bacterial physiology] [Paper9]
  2. Sridhara V and Joshi RP. Numerical study of lipid translocation driven by nanoporation due to multiple high-intensity, ultrashort electrical pulses. Biochim Biophys Acta. 2014 Mar;1838(3):902-9. DOI:10.1016/j.bbamem.2013.11.003 | PubMed ID:24239610 | HubMed [Paper8]
  3. Sridhara V, Bai DL, Chi A, Shabanowitz J, Hunt DF, Bryant SH, and Geer LY. Increasing peptide identifications and decreasing search times for ETD spectra by pre-processing and calculation of parent precursor charge. Proteome Sci. 2012 Feb 9;10(1):8. DOI:10.1186/1477-5956-10-8 | PubMed ID:22321509 | HubMed [Paper7]
  4. Sridhara V, Marchler-Bauer A, Bryant SH, and Geer LY. Automatic annotation of experimentally derived, evolutionarily conserved post-translational modifications onto multiple genomes. Database (Oxford). 2011;2011:bar019. DOI:10.1093/database/bar019 | PubMed ID:21571812 | HubMed [Paper6]
  5. Garner AL, Chen G, Chen N, Sridhara V, Kolb JF, Swanson RJ, Beebe SJ, Joshi RP, and Schoenbach KH. Ultrashort electric pulse induced changes in cellular dielectric properties. Biochem Biophys Res Commun. 2007 Oct 12;362(1):139-44. DOI:10.1016/j.bbrc.2007.07.159 | PubMed ID:17706595 | HubMed [Paper5]
  6. Joshi RP, Nguyen A, Sridhara V, Hu Q, Nuccitelli R, Beebe SJ, Kolb J, and Schoenbach KH. Simulations of intracellular calcium release dynamics in response to a high-intensity, ultrashort electric pulse. Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Apr;75(4 Pt 1):041920. DOI:10.1103/PhysRevE.75.041920 | PubMed ID:17500934 | HubMed [Paper4]
  7. Pliquett U, Joshi RP, Sridhara V, and Schoenbach KH. High electrical field effects on cell membranes. Bioelectrochemistry. 2007 May;70(2):275-82. DOI:10.1016/j.bioelechem.2006.10.004 | PubMed ID:17123870 | HubMed [Paper3]
  8. Joshi RP, Sridhara V, and Schoenbach KH. Microscopic calculations of local lipid membrane permittivities and diffusion coefficients for application to electroporation analyses. Biochem Biophys Res Commun. 2006 Sep 22;348(2):643-8. DOI:10.1016/j.bbrc.2006.07.144 | PubMed ID:16890913 | HubMed [Paper2]
  9. Hu Q, Viswanadham S, Joshi RP, Schoenbach KH, Beebe SJ, and Blackmore PF. Simulations of transient membrane behavior in cells subjected to a high-intensity ultrashort electric pulse. Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Mar;71(3 Pt 1):031914. DOI:10.1103/PhysRevE.71.031914 | PubMed ID:15903466 | HubMed [Paper1]
  10. [List of all publications] [Papers]
All Medline abstracts: PubMed | HubMed

Useful links