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|style="background-color: #EEE"|[[Image:owwnotebook_icon.png|128px]]<span style="font-size:22px;"> Project name</span>
 
|style="background-color: #EEE"|[[Image:owwnotebook_icon.png|128px]]<span style="font-size:22px;"> Project name</span>
|style="background-color: #F2F2F2" align="center"|<html><img src="/images/9/94/Report.png" border="0" /></html> [[{{#sub:{{FULLPAGENAME}}|0|-11}}|Main project page]]<br />{{#if:{{#lnpreventry:{{FULLPAGENAME}}}}|<html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>[[{{#lnpreventry:{{FULLPAGENAME}}}}{{!}}Previous entry]]<html>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</html>}}{{#if:{{#lnnextentry:{{FULLPAGENAME}}}}|[[{{#lnnextentry:{{FULLPAGENAME}}}}{{!}}Next entry]]<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html>}}
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|style="background-color: #F2F2F2" align="center"|[[File:Report.png|frameless|link={{#sub:{{FULLPAGENAME}}|0|-11}}]][[{{#sub:{{FULLPAGENAME}}|0|-11}}|Main project page]]<br />{{#if:{{#lnpreventry:{{FULLPAGENAME}}}}|[[File:Resultset_previous.png|frameless|link={{#lnpreventry:{{FULLPAGENAME}}}}]][[{{#lnpreventry:{{FULLPAGENAME}}}}{{!}}Previous entry]]&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;}}{{#if:{{#lnnextentry:{{FULLPAGENAME}}}}|[[{{#lnnextentry:{{FULLPAGENAME}}}}{{!}}Next entry]][[File:Resultset_next.png|frameless|link={{#lnnextentry:{{FULLPAGENAME}}}}]]}}
 
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** [https://en.wikipedia.org/wiki/Institut_national_de_la_recherche_agronomique INRA]: [http://www.inra.fr/en web site], [https://intranet.inra.fr/ intranet], [https://intranet.annuaire.inra.fr/accueil.action directory]
 
** [https://en.wikipedia.org/wiki/Institut_national_de_la_recherche_agronomique INRA]: [http://www.inra.fr/en web site], [https://intranet.inra.fr/ intranet], [https://intranet.annuaire.inra.fr/accueil.action directory]
 
*** BAP: [http://www.bap.inra.fr/en web site], [https://intranet6.inra.fr/bap intranet]
 
*** BAP: [http://www.bap.inra.fr/en web site], [https://intranet6.inra.fr/bap intranet]
*** centre of Montpellier: [http://www.montpellier.inra.fr/ web site], [https://intranet.montpellier.inra.fr/ intranet], [http://www.supagro.fr/web/UserFiles/Flash/plan-campus.html map]
+
*** centre of Montpellier: [http://www.montpellier.inra.fr/ web site], [https://intranet.montpellier.inra.fr/ intranet], [http://www.supagro.fr/web/UserFiles/Flash/plan-campus.html map], [https://web.supagro.inra.fr/intranet/trombino/ directory]
** [https://en.wikipedia.org/wiki/Centre_de_coop%C3%A9ration_internationale_en_recherche_agronomique_pour_le_d%C3%A9veloppement CIRAD]: [http://www.cirad.fr/en/home-page web site], [https://intranet.cirad.fr/ intranet], [http://www.cirad.fr/var/cirad/storage/original/application/05038b0c55a79c3d0f2f420aa7025e4d.swf map]
+
** [https://en.wikipedia.org/wiki/Centre_de_coop%C3%A9ration_internationale_en_recherche_agronomique_pour_le_d%C3%A9veloppement CIRAD]: [http://www.cirad.fr/en/home-page web site], [https://intranet.cirad.fr/ intranet] ([https://sso.cirad.fr/login authentification] if outside CIRAD), [http://intranet-search.cirad.fr/agents directory], [http://www.cirad.fr/var/cirad/storage/original/application/05038b0c55a79c3d0f2f420aa7025e4d.swf map]
** [https://fr.wikipedia.org/wiki/Centre_international_d%27%C3%A9tudes_sup%C3%A9rieures_en_sciences_agronomiques SupAgro]: [http://www.supagro.fr/web/en/ web site], [https://www.supagro.fr/web/intranet/ intranet], [http://www.supagro.fr/web/UserFiles/Flash/plan-campus.html map]
+
** [https://fr.wikipedia.org/wiki/Centre_international_d%27%C3%A9tudes_sup%C3%A9rieures_en_sciences_agronomiques SupAgro]: [http://www.supagro.fr/web/en/ web site], [https://www.supagro.fr/web/intranet/ intranet], [http://www.supagro.fr/web/UserFiles/Flash/plan-campus.html map], [https://web.supagro.inra.fr/intranet/trombino/ directory]
 
** AGAP: [http://umr-agap.cirad.fr/en web site], [https://intranet-umr-agap.cirad.fr/ intranet]
 
** AGAP: [http://umr-agap.cirad.fr/en web site], [https://intranet-umr-agap.cirad.fr/ intranet]
 +
*** DAAV: [http://umr-agap.cirad.fr/en/equipes-scientifiques/diversite-adaptation-et-amelioration-de-la-vigne/contexte-et-objectifs web page]
 +
** UMT Géno-Vigne ®: [http://www.vignevin.com/linstitut/partenaires/unite-mixte-technologique.html web page]
 +
** [http://en.wikipedia.org/wiki/Agropolis_Fondation Agropolis Fondation]: [http://www.agropolis-fondation.fr/ web site]
  
 
* '''Tools:'''
 
* '''Tools:'''
** visioconference for academics: [http://evo.renater.fr/ SeeVogh]
 
 
** SupAgro:
 
** SupAgro:
*** email: [https://web.supagro.inra.fr/horde3/imp/login.php Horde]
+
*** [http://www.montpellier.inra.fr/intranet/intracampus/reservations/viti/ bookings] for team "vigne" (cars, rooms, videoproj, etc; Aurelie Pedrola for Ferguson's room), [https://www1.montpellier.inra.fr/intranet/intracampus/reservations/R_Tableau_reservation.php?type=salle_arbo room MISTEA/AGAP], [https://reservations-vehicules.inra.fr/ cars]
*** mailing lists: [https://listes.supagro.inra.fr/sympa/ Sympa]
+
*** mailing lists: [https://listes.supagro.inra.fr/sympa/ Sympa] (umr-agap-daav, umr-agap-ge2pop, umr-davem-bioinfo)
 
*** [http://web.supagro.inra.fr/pmb/opac_css/index.php library]
 
*** [http://web.supagro.inra.fr/pmb/opac_css/index.php library]
** INRA (notably via the [https://intranet6.inra.fr/systemes-information/Offre-de-service DSI])
+
*** VPN client: [https://web.supagro.inra.fr/intranet/uic/index.php?post/2014/09/11/Installation-OpenVPN OpenVPN], [https://web.supagro.inra.fr/intranet/BAO/Forti/ Fortinet]
*** mailing lists: [https://listes.inra.fr/sympa Sympa]
+
*** IT help: [https://web.supagro.inra.fr/intranet/uic/index.php EIC]
*** shared online calendars: [https://agenda.inra.fr/ YaZiba]
+
*** databases: [https://web.supagro.inra.fr/phpmyadmin/ phpMyAdmin], [https://web.supagro.inra.fr/intranet/phppgadmin/ phpPgAdmin]
*** shared large files: [https://echange-fichiers.inra.fr/ FileX]
+
*** courses: [https://ticea.supagro.inra.fr/ TicéA]
*** spaces for collaborative projects: [https://collaboratif.inra.fr/silverpeas Silverpeas]
+
** INRA: many services are available from [https://ariane.inra.fr/ Ariane] (mailing lists, collaborative projects, calendars, visioconference, cloud, wiki, missions, leave days, etc)
*** spaces for collaborative editing: [https://wiki.inra.fr/ Xwiki]
+
*** [http://messagerie.inra.fr/ webmail] (Outlook)
 +
*** [https://intranet6.inra.fr/openscience OpenScience]
 
*** [https://belinra.inra.fr/ libraries]
 
*** [https://belinra.inra.fr/ libraries]
 
*** [http://www.mathinfo.inra.fr/en maths-info]
 
*** [http://www.mathinfo.inra.fr/en maths-info]
 
*** [https://elearning.formation-permanente.inra.fr/ ''e''learning] of the Formation Permanente
 
*** [https://elearning.formation-permanente.inra.fr/ ''e''learning] of the Formation Permanente
 +
*** PEPI [http://www6.inra.fr/pepi/Ingenierie-Bio-Informatique-et-Statistique-pour-les-donnees-haut-debit-IBIS IBIS] (bioinfo and biostat)
 
** CIRAD:
 
** CIRAD:
 +
*** mailing lists: [http://sympa.cirad.fr/sympa/ Sympa] (biostatsagap: first log in to CIRAD intranet, then log in to Sympa)
 +
*** personal online space: [https://espace-perso.cirad.fr/c/portal/login Espace perso]
 +
*** spaces for collaborative projects: [https://collaboratif.cirad.fr/share/page/repository Alfresco]
 +
*** shared large files: [http://filex.cirad.fr/ FileX]
 
*** online talks: [http://amphi-tv.cirad.fr/ AmphiTV] (possibly live)
 
*** online talks: [http://amphi-tv.cirad.fr/ AmphiTV] (possibly live)
 +
*** VPN client: [ftp://ftp.cirad.fr/cirad/fortinet/ Fortinet]
 +
*** streaming of talks via [http://www.videolan.org/vlc/ VLC]: rtmp://cirad.live-fstreams.cdn02.rambla.be:1935/live-cirad/live-cirad-mediaserver-1
 +
** [https://www.renater.fr/ RENATER]:
 +
*** [https://www.renater.fr/voix-et-image?lang=fr visioconference], notably [https://rendez-vous.renater.fr/ Rendez-Vous]
 +
*** (large) file sender: [https://filesender.renater.fr/ FileSender]
  
 
* '''Computing platforms:''' especially high performance computing resources (HPC, that is computer clusters)
 
* '''Computing platforms:''' especially high performance computing resources (HPC, that is computer clusters)
** URGI: [https://urgi.versailles.inra.fr/ web site], [https://urgi.versailles.inra.fr/Platform/User-support get account] (need fixed IP, then ssh -Y tflutre@gpi.versailles.inra.fr), support (urgi-support@versailles.inra.fr)
+
** URGI: [https://urgi.versailles.inra.fr/ web site], [https://urgi.versailles.inra.fr/Platform/User-support get account] (need fixed IP or [https://acces-versailles.versailles.inra.fr/ not], then ssh -Y tflutre@saruman.versailles.inra.fr), support (urgi-support@versailles.inra.fr)
** SouthGreen: [http://www.southgreen.fr/ web site], [http://www.southgreen.fr/content/computer-facilities get account] (need [https://vpn-montpellier.cirad.fr/ VPN], then ssh -Y flutre@marmadais.cirad.fr), [http://www.southgreen.fr/content/report-problem support]
+
** SouthGreen: [http://www.southgreen.fr/ web site], [http://www.southgreen.fr/content/computer-facilities get account] (need [ftp://ftp.cirad.fr/cirad/fortinet/ VPN]: ./forticlientsslvpn_cli --server vpn-montpellier.cirad.fr:443 --vpnuser timothee.flutre, and then ssh -Y flutre@cc2-login.cirad.fr), [http://www.southgreen.fr/content/report-problem support], use qlogin -q bigmem.q to get X11 forwarding from compute nodes, [http://montreuillois.cirad.fr/ gitlab], [http://marmadais.cirad.fr/rstudio/ RStudio]
 
** Migale: [http://migale.jouy.inra.fr/ web site], [http://migale.jouy.inra.fr/?q=ressources get account] (then ssh -Y tflutre@migale.jouy.inra.fr), support (help.migale@jouy.inra.fr)
 
** Migale: [http://migale.jouy.inra.fr/ web site], [http://migale.jouy.inra.fr/?q=ressources get account] (then ssh -Y tflutre@migale.jouy.inra.fr), support (help.migale@jouy.inra.fr)
** GenOuest: [http://www.genouest.org/ web site], [http://genoweb1.irisa.fr/AppliESIB/access/access-en.php get account] (need fixed IP, then ssh -Y tflutre@genocluster2.irisa.fr), support (support@genouest.org)
+
** GenOuest: [http://www.genouest.org/ web site], [http://genoweb1.irisa.fr/AppliESIB/access/access-en.php get account] (ssh -Y tflutre@genossh.genouest.org), support (support@genouest.org)
  
 
* '''Miscellaneous:'''
 
* '''Miscellaneous:'''
 +
** [http://www.legifrance.gouv.fr/affichCode.do?cidTexte=LEGITEXT000006071190 Code de la Recherche]
 +
** [https://gaia.umontpellier.fr/ ED GAIA] (graduate school)
 +
** print posters in Montpellier: [http://espacecopie.fr/ Espace Copie], [http://www.imaprint.fr/ ImaPrint]
 +
** [https://www.abcontrats.inra.fr/ portail juridique] de l'INRA, [http://www.supagro.fr/web/pages/?idl=19&page=536 Agro Valo Méditerranée]
 +
** GNU/Linux distribution by an INRA lab: [https://2ic.pepi.inra.fr/index.php/poste-de-travail/systeme-dexploitation/520-distribution-debian-customisee-pour-une-utilisation-bureautique Debian PAPPSO]
 
** [http://www.math.univ-montp2.fr/SPIP/sem.php3?a=programme&sem=13 Séminaire de Probabilités et Statistique] de Montpellier (mailing list [http://www.math.univ-montp2.fr/~pudlo/Semstat/_.html semstat])
 
** [http://www.math.univ-montp2.fr/SPIP/sem.php3?a=programme&sem=13 Séminaire de Probabilités et Statistique] de Montpellier (mailing list [http://www.math.univ-montp2.fr/~pudlo/Semstat/_.html semstat])
 
** Computational Biology Institute of Montpellier ([http://www.ibc-montpellier.fr/ IBC]): mailing list [https://listes.lirmm.fr/sympa/info/ibc-all ibc-all]
 
** Computational Biology Institute of Montpellier ([http://www.ibc-montpellier.fr/ IBC]): mailing list [https://listes.lirmm.fr/sympa/info/ibc-all ibc-all]
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** Société Française de Bio-Informatique ([http://www.sfbi.fr/ SFBI]): [http://listes.sfbi.fr/wws/info/bioinfo mailing list] ("liste bioinfo")
 
** Société Française de Bio-Informatique ([http://www.sfbi.fr/ SFBI]): [http://listes.sfbi.fr/wws/info/bioinfo mailing list] ("liste bioinfo")
 
** mailing lists on "evolution": [https://listes.univ-montp2.fr/sympa/d_read/evolmontp/divers/evolmontp_mode_demploi.txt evolmontp], [https://listes.univ-montp2.fr/sympa/d_read/evolfrance/divers/evolfrance_mode_demploi.txt evolfrance], [http://evol.mcmaster.ca/evoldir.html evoldir]
 
** mailing lists on "evolution": [https://listes.univ-montp2.fr/sympa/d_read/evolmontp/divers/evolmontp_mode_demploi.txt evolmontp], [https://listes.univ-montp2.fr/sympa/d_read/evolfrance/divers/evolfrance_mode_demploi.txt evolfrance], [http://evol.mcmaster.ca/evoldir.html evoldir]
 +
** mailing list of the International Grape Genome Program ([http://www.vitaceae.org/index.php/Communication_Resources_for_Grape_Researchers IGGP])
 +
** mailing list of the [http://genomes.cribi.unipd.it/grape/index.php CRIBI] about the grape genome annotation
  
 
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Latest revision as of 22:38, 26 September 2017

Owwnotebook icon.png Project name Report.pngMain project page
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Bookmarks for INRA, CIRAD, SupAgro, and more

  • I have been hired by the INRA, in the department "Plant biology and breeding" (BAP in French), but the laboratory in which I am working, AGAP, depends on several research institutes: INRA, CIRAD and SupAgro. The primary goal of such an institutional organization is to build a lab to "encompass a wide range of skills and be a leading platform for applied plant biology and genetics", which is a good endevaour. However, on a daily basis, this is particularly challenging as information is scattered around, and each person needs its own access rights to the tools used by each institute. This web page hence aims at providing a list of links to navigate easily among all sources of information.
  • Computing platforms: especially high performance computing resources (HPC, that is computer clusters)
    • URGI: web site, get account (need fixed IP or not, then ssh -Y tflutre@saruman.versailles.inra.fr), support (urgi-support@versailles.inra.fr)
    • SouthGreen: web site, get account (need VPN: ./forticlientsslvpn_cli --server vpn-montpellier.cirad.fr:443 --vpnuser timothee.flutre, and then ssh -Y flutre@cc2-login.cirad.fr), support, use qlogin -q bigmem.q to get X11 forwarding from compute nodes, gitlab, RStudio
    • Migale: web site, get account (then ssh -Y tflutre@migale.jouy.inra.fr), support (help.migale@jouy.inra.fr)
    • GenOuest: web site, get account (ssh -Y tflutre@genossh.genouest.org), support (support@genouest.org)