User:Tie Koide

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Revision as of 18:19, 21 June 2009 by Tie Koide (talk | contribs) (Publications)

I am a new member of OpenWetWare!

Contact Info

Tie Koide (an artistic interpretation)
  • Tie Koide
  • Universidade de São Paulo, Faculdade de Medicina de Ribeirão Preto - Departamento de Bioquímica e Imunologia
  • Avenida dos Bandeirantes, 3900
  • Monte Alegre
  • Ribeirão Preto - SP - BRASIL
  • Email me through OpenWetWare

I work in the Laboratory of Systems Biology of Microorganisms at Universidade de São Paulo. I learned about OpenWetWare from From synthetic biology pages from MIT and Ricardo Vencio, from Universidade de São Paulo, who hosts his lab page at openwet ware, and I've joined because I would like to create my lab home page in OpenWetWare. I am starting my carreer as a Professor and starting a lab.


Research interests

  1. Systems Biology
  2. Microbiology
  3. Molecular Biology


  1. Koide T, Reiss DJ, Bare JC, Pang WL, Facciotti MT, Schmid AK, Pan M, Marzolf B, Van PT, Lo FY, Pratap A, Deutsch EW, Peterson A, Martin D, and Baliga NS. Prevalence of transcription promoters within archaeal operons and coding sequences. Mol Syst Biol. 2009;5:285. DOI:10.1038/msb.2009.42 | PubMed ID:19536208 | HubMed [Paper1]
  2. Schmid AK, Reiss DJ, Pan M, Koide T, and Baliga NS. A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability. Mol Syst Biol. 2009;5:282. DOI:10.1038/msb.2009.40 | PubMed ID:19536205 | HubMed [Paper2]
  3. Koide T, Pang WL, and Baliga NS. The role of predictive modelling in rationally re-engineering biological systems. Nat Rev Microbiol. 2009 Apr;7(4):297-305. DOI:10.1038/nrmicro2107 | PubMed ID:19252506 | HubMed [Paper3]
  4. Salem-Izacc SM, Koide T, Vêncio RZ, and Gomes SL. Global gene expression analysis during germination in the chytridiomycete Blastocladiella emersonii. Eukaryot Cell. 2009 Feb;8(2):170-80. DOI:10.1128/EC.00330-08 | PubMed ID:19098129 | HubMed [Paper4]
  5. Van PT, Schmid AK, King NL, Kaur A, Pan M, Whitehead K, Koide T, Facciotti MT, Goo YA, Deutsch EW, Reiss DJ, Mallick P, and Baliga NS. Halobacterium salinarum NRC-1 PeptideAtlas: toward strategies for targeted proteomics and improved proteome coverage. J Proteome Res. 2008 Sep;7(9):3755-64. DOI:10.1021/pr800031f | PubMed ID:18652504 | HubMed [Paper5]
  6. da Silva Neto JF, Koide T, Abe CM, Gomes SL, and Marques MV. Role of sigma54 in the regulation of genes involved in type I and type IV pili biogenesis in Xylella fastidiosa. Arch Microbiol. 2008 Mar;189(3):249-61. DOI:10.1007/s00203-007-0314-x | PubMed ID:17985115 | HubMed [Paper6]
  7. da Silva Neto JF, Koide T, Gomes SL, and Marques MV. The single extracytoplasmic-function sigma factor of Xylella fastidiosa is involved in the heat shock response and presents an unusual regulatory mechanism. J Bacteriol. 2007 Jan;189(2):551-60. DOI:10.1128/JB.00986-06 | PubMed ID:17098905 | HubMed [Paper7]
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All Medline abstracts: PubMed | HubMed

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