Difference between revisions of "User:Pedrobeltrao/Notebook/Structural analysis of phosphorylation sites/Setup"

From OpenWetWare
Jump to: navigation, search
(Prerequisites)
m (Fetch data and code)
Line 27: Line 27:
 
1. checkout a fresh copy of the project folder  
 
1. checkout a fresh copy of the project folder  
 
   <code>svn checkout http://phospho3d.googlecode.com/svn/trunk/ phospho3d</code>
 
   <code>svn checkout http://phospho3d.googlecode.com/svn/trunk/ phospho3d</code>
2. Link the shared Dropbox folder with data into the project folder
+
2. Link the shared data from the Dropbox into the project folder
 
   <code>ln -s ~/Dropbox/phospho3d phospho3d/dat</code>
 
   <code>ln -s ~/Dropbox/phospho3d phospho3d/dat</code>
  

Revision as of 11:02, 26 September 2009

Owwnotebook icon.png Structural analysis of phosphorylation sites

How to set up your local copy of the project

As it seems, there is no easy one-stop solution for scientific data sharing and collaboration. So we have to rely on a mix of different programs and services.

Prerequisites

  1. Install subversion (svn)
  2. Install the Dropbox program
  3. Install the Zotero firefox plugin
  4. Install the Biskit library

Request membership

  1. send an e-mail to Pedro or Raik and ask for:
    • dropbox folder sharing
    • google code membership

Fetch data and code

1. checkout a fresh copy of the project folder

 svn checkout http://phospho3d.googlecode.com/svn/trunk/ phospho3d

2. Link the shared data from the Dropbox into the project folder

 ln -s ~/Dropbox/phospho3d phospho3d/dat

Join the literature collection

  1. http://www.zotero.org/groups/phospho3d