Difference between revisions of "User:Mary Mendoza/Notebook/CHEM572 Exp. Biological Chemistry II/2013/02/06"

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(Computational Screening)
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==Computational Screening==
 
==Computational Screening==
*  
+
* Maestro imported structures
 +
* Structures were sorted by docking score
 +
* Choose molecules with two criteria similarity with aspirin and basis of docking score.
 +
* The structures will be chosen with respect to the Tanimoto coefficient.
 +
 
 +
 
 +
* On the workspace, observed the structures with its bonding to the amino acids located on the binding pocket.
 +
* Molecules with Arginine bind best to the carboxylate of the amino acids.
 +
* Some molecules are efficient in terms of geometry and size but few hydrogen bonds.
 +
 
  
  

Revision as of 09:30, 6 February 2013

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Computational Screening

  • Maestro imported structures
  • Structures were sorted by docking score
  • Choose molecules with two criteria similarity with aspirin and basis of docking score.
  • The structures will be chosen with respect to the Tanimoto coefficient.


  • On the workspace, observed the structures with its bonding to the amino acids located on the binding pocket.
  • Molecules with Arginine bind best to the carboxylate of the amino acids.
  • Some molecules are efficient in terms of geometry and size but few hydrogen bonds.