Difference between revisions of "User:Karmella Haynes/Notebook/PcTF Genomics/2014/07/23"

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(Autocreate 2014/07/23 Entry for User:Karmella_Haynes/Notebook/PcTF_Genomics)
 
(mm/dd/yy)
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==mm/dd/yy==
 
==mm/dd/yy==
 
<!-- Precede finished items with a checkmark &#x2713; -->
 
<!-- Precede finished items with a checkmark &#x2713; -->
* Line item 1
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* PcTF ChIPseq
  
 
----
 
----
'''Line item 1'''<br>
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'''Promoters research'''<br>
> Samples
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* Found free promoters database at the Eukaryotic Promoter Database website
 
+
* Retrieved BED file of all human promoters from: http://epd.vital-it.ch/get_promoters.php
{| class="wikitable" border="0" cellspacing="3" <!-- Rxn. table -->
+
** Selected H. sapiens, left all other options blank, clicked [select], downloaded BED file, uploaded to Galaxy
|-valign="top"
+
** Total promoters: 23,316
| <u>Reagent</u> || <u>Volume</u>
+
** Gene names are included!
|-
 
| reagent 1 || # μL
 
|-
 
| reagent 2 || #
 
|-
 
| reagent 3 || #
 
|-
 
| reagent 4 || #
 
|-
 
| dH<sub>2</sub>O || #
 
|-
 
| &nbsp; || # μL
 
|}
 
 
 
--> Reaction conditions
 
  
  

Revision as of 14:04, 23 July 2014

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mm/dd/yy

  • PcTF ChIPseq

Promoters research

  • Found free promoters database at the Eukaryotic Promoter Database website
  • Retrieved BED file of all human promoters from: http://epd.vital-it.ch/get_promoters.php
    • Selected H. sapiens, left all other options blank, clicked [select], downloaded BED file, uploaded to Galaxy
    • Total promoters: 23,316
    • Gene names are included!